Design of synthetic human gut microbiome assembly and butyrate production von Clark, Ryan L., Connors, Bryce M., Stevenson, David M., Hromada, Susan E., Hamilton, Joshua J., Amador-Noguez, Daniel, Venturelli, Ophelia S.

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Dominance of Prevotella and low abundance of classical ruminal bacterial species in the bovine rumen revealed by relative quantification real-time PCR von Stevenson, David M, Weimer, Paul J

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Isolation, characterization, and quantification of Clostridium kluyveri from the bovine rumen von Weimer, Paul J., Stevenson, David M.

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complete genome sequence of fibrobacter succinogenes S85 reveals a cellulolytic and metabolic specialist von Suen, Garret, Weimer, Paul J, Stevenson, David M, Aylward, Frank O, Boyum, Julie, Deneke, Jan, Drinkwater, Colleen, Ivanova, Natalia N, Mikhailova, Natalia, Chertkov, Olga, Goodwin, Lynne A, Currie, Cameron R, Mead, David, Brumm, Phillip J

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The nucleotide pGpp acts as a third alarmone in Bacillus, with functions distinct from those of (p)ppGpp von Yang, Jin, Anderson, Brent W., Turdiev, Asan, Turdiev, Husan, Stevenson, David M., Amador-Noguez, Daniel, Lee, Vincent T., Wang, Jue D.

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Metabolic Remodeling during Biofilm Development of Bacillus subtilis von Pisithkul, Tippapha, Schroeder, Jeremy W, Trujillo, Edna A, Yeesin, Ponlkrit, Stevenson, David M, Chaiamarit, Tai, Coon, Joshua J, Wang, Jue D, Amador-Noguez, Daniel

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Metabolic Promiscuity of an Orphan Small Alarmone Hydrolase Facilitates Bacterial Environmental Adaptation von Fung, Danny K, Bai, Kaihong, Yang, Jin, Xu, Xiaoli, Stevenson, David M, Amador-Noguez, Daniel, Luo, Laixin, Wang, Jue D

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Symbiotic Nitrogen Fixation in the Fungus Gardens of Leaf-Cutter Ants von Pinto-Tomás, Adrián A, Anderson, Mark A, Suen, Garret, Stevenson, David M, Chu, Fiona S.T, Cleland, W. Wallace, Weimer, Paul J, Currie, Cameron R

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Small Alarmone Synthetase SasA Expression Leads to Concomitant Accumulation of pGpp, ppApp, and AppppA in Bacillus subtilis von Fung, Danny K., Yang, Jin, Stevenson, David M., Amador-Noguez, Daniel, Wang, Jue D.

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Exogenous butyrate inhibits butyrogenic metabolism and alters virulence phenotypes in Clostridioides difficile von Pensinger, Daniel A, Dobrila, Horia A, Stevenson, David M, Hryckowian, Nicole D, Amador-Noguez, Daniel, Hryckowian, Andrew J

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Phagocytes produce prostaglandin E2 in response to cytosolic Listeria monocytogenes von McDougal, Courtney E, Morrow, Zachary T, Christopher, Tighe, Kim, Seonyoung, Carter, Drake, Stevenson, David M, Amador-Noguez, Daniel, Miller, Mark J, Sauer, John-Demian

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Author Correction: The nucleotide pGpp acts as a third alarmone in Bacillus, with functions distinct from those of (p)ppGpp von Yang, Jin, Anderson, Brent W., Turdiev, Asan, Turdiev, Husan, Stevenson, David M., Amador-Noguez, Daniel, Lee, Vincent T., Wang, Jue D.

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ARISA analysis of ruminal bacterial community dynamics in lactating dairy cows during the feeding cycle von Welkie, David G., Stevenson, David M., Weimer, Paul J.

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Reformulation of an extant ATPase active site to mimic ancestral GTPase activity reveals a nucleotide base requirement for function von Updegrove, Taylor B, Harke, Jailynn, Anantharaman, Vivek, Yang, Jin, Gopalan, Nikhil, Wu, Di, Piszczek, Grzegorz, Stevenson, David M, Amador-Noguez, Daniel, Wang, Jue D, Aravind, L, Ramamurthi, Kumaran S

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Autotrophic and mixotrophic metabolism of an anammox bacterium revealed by in vivo 13C and 2H metabolic network mapping von Lawson, Christopher E., Nuijten, Guylaine H. L., de Graaf, Rob M., Jacobson, Tyler B., Pabst, Martin, Stevenson, David. M., Jetten, Mike S. M., Noguera, Daniel R., McMahon, Katherine D., Amador-Noguez, Daniel, Lücker, Sebastian

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Global Gene Expression Patterns in Clostridium thermocellum as Determined by Microarray Analysis of Chemostat Cultures on Cellulose or Cellobiose von Riederer, Allison, Takasuka, Taichi E, Makino, Shin-ichi, Stevenson, David M, Bukhman, Yury V, Elsen, Nathaniel L, Fox, Brian G

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Pyrophosphate-free glycolysis in Clostridium thermocellum increases both thermodynamic driving force and ethanol titers von Sharma, Bishal Dev, Hon, Shuen, Thusoo, Eashant, Stevenson, David M, Amador-Noguez, Daniel, Guss, Adam M, Lynd, Lee R, Olson, Daniel G

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Complete Genome of the Cellulolytic Ruminal Bacterium Ruminococcus albus 7 von SUEN, Garret, STEVENSON, David M, HAUSER, Loren J, IVANOVA, Natalia N, KYRPIDES, Nikos C, LAND, Miriam L, LAPIDUS, Alla, LUCAS, Susan, OVCHINNIKOVA, Galina, PITLUCK, Sam, TAPIA, Roxanne, WOYKE, Tanja, BRUCE, David C, BOYUM, Julie, MEAD, David, WEIMER, Paul J, CHERTKOV, Olga, COPELAND, Alex, CHENG, Jan-Feng, DETTER, Chris, DETTER, John C, GOODWIN, Lynne A, HAN, Cliff S

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Effect of monensin feeding and withdrawal on populations of individual bacterial species in the rumen of lactating dairy cows fed high-starch rations von Weimer, Paul J, Stevenson, David M, Mertens, David R, Thomas, Elvin E

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Near-equilibrium glycolysis supports metabolic homeostasis and energy yield von Park, Junyoung O., Tanner, Lukas B., Wei, Monica H., Khana, Daven B., Jacobson, Tyler B., Zhang, Zheyun, Rubin, Sara A., Li, Sophia Hsin-Jung, Higgins, Meytal B., Stevenson, David M., Amador-Noguez, Daniel, Rabinowitz, Joshua D.

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