Hybrid error correction and de novo assembly of single-molecule sequencing reads von Koren, Sergey, Schatz, Michael C, Walenz, Brian P, Martin, Jeffrey, Howard, Jason T, Ganapathy, Ganeshkumar, Wang, Zhong, Rasko, David A, McCombie, W Richard, Jarvis, Erich D, Phillippy, Adam M

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Genomic diversity of non-diarrheagenic fecal Escherichia coli from children in sub-Saharan Africa and south Asia and their relatedness to diarrheagenic E. coli von Hazen, Tracy H., Michalski, Jane M., Tennant, Sharon M., Rasko, David. A.

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Bacterial genome sequencing in the clinic: bioinformatic challenges and solutions von Fricke, W. Florian, Rasko, David A.

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The Human Microbiome: From Symbiosis to Pathogenesis von Eloe-Fadrosh, Emiley A, Rasko, David A

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Best practices on the differential expression analysis of multi-species RNA-seq von Chung, Matthew, Bruno, Vincent M., Rasko, David A., Cuomo, Christina A., Munoz, Jose F., Livny, Jonathan, Shetty, Amol C., Mahurkar, Anup, Dunning Hotopp, Julie C.

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The QseC adrenergic signaling cascade in Enterohemorrhagic E. coli (EHEC) von Hughes, David T, Clarke, Marcie B, Yamamoto, Kaneyoshi, Rasko, David A, Sperandio, Vanessa

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Host-specific induction of Escherichia coli fitness genes during human urinary tract infection von Subashchandrabose, Sargurunathan, Hazen, Tracy H., Brumbaugh, Ariel R., Hirnpsl, Stephanie D., Smith, Sara N., Ernst, Robert D., Rasko, David A., Mobley, Harry L. T.

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Survival of the Fittest: How Bacterial Pathogens Utilize Bile To Enhance Infection von Sistrunk, Jeticia R, Nickerson, Kourtney P, Chanin, Rachael B, Rasko, David A, Faherty, Christina S

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Locus of Adhesion and Autoaggregation (LAA), a pathogenicity island present in emerging Shiga Toxin–producing Escherichia coli strains von Montero, David A., Velasco, Juliana, Del Canto, Felipe, Puente, Jose L., Padola, Nora L., Rasko, David A., Farfán, Mauricio, Salazar, Juan C., Vidal, Roberto

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The large-scale blast score ratio (LS-BSR) pipeline: a method to rapidly compare genetic content between bacterial genomes von Sahl, Jason W, Caporaso, J Gregory, Rasko, David A, Keim, Paul

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The Pangenome Structure of Escherichia coli: Comparative Genomic Analysis of E. coli Commensal and Pathogenic Isolates von RASKO, David A, ROSOVITZ, M. J, HENDERSON, Ian R, SPERANDIO, Vanessa, RAVEL, Jacques, MYERS, Garry S. A, MONGODIN, Emmanuel F, FRICKE, W. Florian, GAJER, Pawel, CRABTREE, Jonathan, SEBAIHIA, Mohammed, THOMSON, Nicholas R, CHAUDHURI, Roy

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Enterotoxigenic Escherichia coli Secretes a Highly Conserved Mucin-Degrading Metalloprotease To Effectively Engage Intestinal Epithelial Cells von Luo, Qingwei, Kumar, Pardeep, Vickers, Tim J, Sheikh, Alaullah, Lewis, Warren G, Rasko, David A, Sistrunk, Jeticia, Fleckenstein, James M

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Redefining enteroaggregative Escherichia coli (EAEC): Genomic characterization of epidemiological EAEC strains von Boisen, Nadia, Osterlund, Mark T., Joensen, Katrine G., Santiago, Araceli E., Mandomando, Inacio, Cravioto, Alejandro, Chattaway, Marie A., Gonyar, Laura A., Overballe-Petersen, Soren, Stine, O. Colin, Rasko, David A., Scheutz, Flemming, Nataro, James P.

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Conservation and global distribution of non-canonical antigens in Enterotoxigenic Escherichia coli von Kuhlmann, F Matthew, Martin, John, Hazen, Tracy H, Vickers, Tim J, Pashos, Madeline, Okhuysen, Pablo C, Gómez-Duarte, Oscar G, Cebelinski, Elizabeth, Boxrud, Dave, Del Canto, Felipe, Vidal, Roberto, Qadri, Firdausi, Mitreva, Makedonka, Rasko, David A, Fleckenstein, James M

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An integrated genomic and transcriptomic survey of mucormycosis-causing fungi von Chibucos, Marcus C., Soliman, Sameh, Gebremariam, Teclegiorgis, Lee, Hongkyu, Daugherty, Sean, Orvis, Joshua, Shetty, Amol C., Crabtree, Jonathan, Hazen, Tracy H., Etienne, Kizee A., Kumari, Priti, O’Connor, Timothy D., Rasko, David A., Filler, Scott G., Fraser, Claire M., Lockhart, Shawn R., Skory, Christopher D., Ibrahim, Ashraf S., Bruno, Vincent M.

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Targeting QseC Signaling and Virulence for Antibiotic Development von Rasko, David A, Moreira, Cristiano G, Li, De Run, Reading, Nicola C, Ritchie, Jennifer M, Waldor, Matthew K, Williams, Noelle, Taussig, Ron, Wei, Shuguang, Roth, Michael, Hughes, David T, Huntley, Jason F, Fina, Maggy W, Falck, John R, Sperandio, Vanessa

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Escherichia coli global gene expression in urine from women with urinary tract infection von Hagan, Erin C, Lloyd, Amanda L, Rasko, David A, Faerber, Gary J, Mobley, Harry L T

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Anti-virulence strategies to combat bacteria-mediated disease von Sperandio, Vanessa, Rasko, David A

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Molecular mechanisms of enterotoxigenic Escherichia coli infection von Fleckenstein, James M., Hardwidge, Philip R., Munson, George P., Rasko, David A., Sommerfelt, Halvor, Steinsland, Hans

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Characterization of the Complete Zwittermicin A Biosynthesis Gene Cluster from Bacillus cereus von Kevany, Brian M, Rasko, David A, Thomas, Michael G

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