In silico evidence for sequence-dependent nucleosome sliding von Lequieu, Joshua, Schwartz, David C., de Pablo, Juan J.

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Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data von Kawahara, Yoshihiro, de la Bastide, Melissa, Hamilton, John P, Kanamori, Hiroyuki, McCombie, W Richard, Ouyang, Shu, Schwartz, David C, Tanaka, Tsuyoshi, Wu, Jianzhong, Zhou, Shiguo, Childs, Kevin L, Davidson, Rebecca M, Lin, Haining, Quesada-Ocampo, Lina, Vaillancourt, Brieanne, Sakai, Hiroaki, Lee, Sung Shin, Kim, Jungsok, Numa, Hisataka, Itoh, Takeshi, Buell, C Robin, Matsumoto, Takashi

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Genome sequence of the model medicinal mushroom Ganoderma lucidum von Chen, Shilin, Xu, Jiang, Liu, Chang, Zhu, Yingjie, Nelson, David R., Zhou, Shiguo, Li, Chunfang, Wang, Lizhi, Guo, Xu, Sun, Yongzhen, Luo, Hongmei, Li, Ying, Song, Jingyuan, Henrissat, Bernard, Levasseur, Anthony, Qian, Jun, Li, Jianqin, Luo, Xiang, Shi, Linchun, He, Liu, Xiang, Li, Xu, Xiaolan, Niu, Yunyun, Li, Qiushi, Han, Mira V., Yan, Haixia, Zhang, Jin, Chen, Haimei, Lv, Aiping, Wang, Zhen, Liu, Mingzhu, Schwartz, David C., Sun, Chao

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A gapless genome sequence of the fungus Botrytis cinerea von Van Kan, Jan A. L., Stassen, Joost H. M., Mosbach, Andreas, Van Der Lee, Theo A. J., Faino, Luigi, Farmer, Andrew D., Papasotiriou, Dimitrios G., Zhou, Shiguo, Seidl, Michael F., Cottam, Eleanor, Edel, Dominique, Hahn, Matthias, Schwartz, David C., Dietrich, Robert A., Widdison, Stephanie, Scalliet, Gabriel

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A superfamily of protein tags: ubiquitin, SUMO and related modifiers von Schwartz, David C., Hochstrasser, Mark

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A coarse grain model for DNA von Knotts, Thomas A., Rathore, Nitin, Schwartz, David C., de Pablo, Juan J.

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Gapless genome assembly of Colletotrichum higginsianum reveals chromosome structure and association of transposable elements with secondary metabolite gene clusters von Dallery, Jean-Félix, Lapalu, Nicolas, Zampounis, Antonios, Pigné, Sandrine, Luyten, Isabelle, Amselem, Joëlle, Wittenberg, Alexander H J, Zhou, Shiguo, de Queiroz, Marisa V, Robin, Guillaume P, Auger, Annie, Hainaut, Matthieu, Henrissat, Bernard, Kim, Ki-Tae, Lee, Yong-Hwan, Lespinet, Olivier, Schwartz, David C, Thon, Michael R, O'Connell, Richard J

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single-molecule barcoding system using nanoslits for DNA analysis von Jo, Kyubong, Dhingra, Dalia M, Odijk, Theo, de Pablo, Juan J, Graham, Michael D, Runnheim, Rod, Forrest, Dan, Schwartz, David C

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Electrostatic confinement and manipulation of DNA molecules for genome analysis von Kounovsky-Shafer, Kristy L., Hernandez-Ortiz, Juan P., Potamousis, Konstantinos, Tsvid, Gene, Place, Michael, Ravindran, Prabu, Jo, Kyubong, Zhou, Shiguo, Odijk, Theo, de Pablo, Juan J., Schwartz, David C.

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High-resolution human genome structure by single-molecule analysis von Teague, Brian, Waterman, Michael S, Goldstein, Steven, Potamousis, Konstantinos, Zhou, Shiguo, Reslewic, Susan, Sarkar, Deepayan, Valouev, Anton, Churas, Christopher, Kidd, Jeffrey M, Kohn, Scott, Runnheim, Rodney, Lamers, Casey, Forrest, Dan, Newton, Michael A, Eichler, Evan E, Kent-First, Marijo, Surti, Urvashi, Livny, Miron, Schwartz, David C

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Single-molecule analysis reveals widespread structural variation in multiple myeloma von Gupta, Aditya, Michael Place, Steven Goldstein, Deepayan Sarkar, Shiguo Zhou, Konstantinos Potamousis, Jaehyup Kim, Claire Flanagan, Yang Li, Michael A. Newton, Natalie S. Callander, Peiman Hematti, Emery H. Bresnick, Jian Ma, Fotis Asimakopoulos, David C. Schwartz

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A single molecule scaffold for the maize genome von Zhou, Shiguo, Wei, Fusheng, Nguyen, John, Bechner, Mike, Potamousis, Konstantinos, Goldstein, Steve, Pape, Louise, Mehan, Michael R, Churas, Chris, Pasternak, Shiran, Forrest, Dan K, Wise, Roger, Ware, Doreen, Wing, Rod A, Waterman, Michael S, Livny, Miron, Schwartz, David C

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The physical and genetic framework of the maize B73 genome von Wei, Fusheng, Zhang, Jianwei, Zhou, Shiguo, He, Ruifeng, Schaeffer, Mary, Collura, Kristi, Kudrna, David, Faga, Ben P, Wissotski, Marina, Golser, Wolfgang, Rock, Susan M, Graves, Tina A, Fulton, Robert S, Coe, Ed, Schnable, Patrick S, Schwartz, David C, Ware, Doreen, Clifton, Sandra W, Wilson, Richard K, Wing, Rod A

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A simple dialysis device for large DNA molecules von Krerowicz, Samuel JW, Hernandez-Ortiz, Juan P, Schwartz, David C

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AGORA: Assembly Guided by Optical Restriction Alignment von Lin, Henry C, Goldstein, Steve, Mendelowitz, Lee, Zhou, Shiguo, Wetzel, Joshua, Schwartz, David C, Pop, Mihai

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The effect of hydrodynamic interactions on the dynamics of DNA translocation through pores von Izmitli, Aslin, Schwartz, David C, Graham, Michael D, de Pablo, Juan J

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Validation of rice genome sequence by optical mapping von Zhou, Shiguo, Bechner, Michael C, Place, Michael, Churas, Chris P, Pape, Louise, Leong, Sally A, Runnheim, Rod, Forrest, Dan K, Goldstein, Steve, Livny, Miron, Schwartz, David C

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Biophysics and the Genomic Sciences von Schwartz, David C.

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Presentation of Large DNA Molecules for Analysis as Nanoconfined Dumbbells von Kounovsky-Shafer, Kristy L, Hernández-Ortiz, Juan P, Jo, Kyubong, Odijk, Theo, de Pablo, Juan J, Schwartz, David C

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Tension-Dependent Free Energies of Nucleosome Unwrapping von Lequieu, Joshua, Córdoba, Andrés, Schwartz, David C, de Pablo, Juan J

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