Multi-omics of permafrost, active layer and thermokarst bog soil microbiomes von Hultman, Jenni, Waldrop, Mark P., Mackelprang, Rachel, David, Maude M., McFarland, Jack, Blazewicz, Steven J., Harden, Jennifer, Turetsky, Merritt R., McGuire, A. David, Shah, Manesh B., VerBerkmoes, Nathan C., Lee, Lang Ho, Mavrommatis, Kostas, Jansson, Janet K.

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Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw von Mackelprang, Rachel, Waldrop, Mark P., DeAngelis, Kristen M., David, Maude M., Chavarria, Krystle L., Blazewicz, Steven J., Rubin, Edward M., Jansson, Janet K.

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Decoding the language of microbiomes using word-embedding techniques, and applications in inflammatory bowel disease von Tataru, Christine A, David, Maude M

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Correction: Decoding the language of microbiomes using word-embedding techniques, and applications in inflammatory bowel disease von Tataru, Christine A., David, Maude M.

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Multi-angle meta-analysis of the gut microbiome in Autism Spectrum Disorder: a step toward understanding patient subgroups von West, Kiana A., Yin, Xiaochen, Rutherford, Erica M., Wee, Brendan, Choi, Jinlyung, Chrisman, Brianna S., Dunlap, Kaiti L., Hannibal, Roberta L., Hartono, Wiputra, Lin, Michelle, Raack, Edward, Sabino, Kayleen, Wu, Yonggan, Wall, Dennis P., David, Maude M., Dabbagh, Karim, DeSantis, Todd Z., Iwai, Shoko

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An open-source, low-cost voluntary running activity tracking tool for in vivo rodent studies von Deitzler, Grace E, Bira, Nicholas P, Davidson, Joseph R, David, Maude M

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The Role of the Microbiome in Autism: All That We Know about All That We Don't Know von David, Maude M.

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Topic modeling for multi-omic integration in the human gut microbiome and implications for Autism von Tataru, Christine, Peras, Marie, Rutherford, Erica, Dunlap, Kaiti, Yin, Xiaochen, Chrisman, Brianna S., DeSantis, Todd Z., Wall, Dennis P., Iwai, Shoko, David, Maude M.

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Comorbid Analysis of Genes Associated with Autism Spectrum Disorders Reveals Differential Evolutionary Constraints von David, Maude M, Enard, David, Ozturk, Alp, Daniels, Jena, Jung, Jae-Yoon, Diaz-Beltran, Leticia, Wall, Dennis P

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Microbial Community Structure and Functional Potential Along a Hypersaline Gradient von Kimbrel, Jeffrey A, Ballor, Nicholas, Wu, Yu-Wei, David, Maude M, Hazen, Terry C, Simmons, Blake A, Singer, Steven W, Jansson, Janet K

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GMEmbeddings: An R Package to Apply Embedding Techniques to Microbiome Data von Tataru, Christine, Eaton, Austin, David, Maude M

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Children with Autism and Their Typically Developing Siblings Differ in Amplicon Sequence Variants and Predicted Functions of Stool-Associated Microbes von David, Maude M., Tataru, Christine, Daniels, Jena, Schwartz, Jessey, Keating, Jessica, Hampton-Marcell, Jarrad, Gottel, Neil, Gilbert, Jack A., Wall, Dennis P.

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Characterization of Denitrification Gene Clusters of Soil Bacteria via a Metagenomic Approach von Demanèche, Sandrine, Philippot, Laurent, David, Maude M, Navarro, Elisabeth, Vogel, Timothy M, Simonet, Pascal

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Modeling of Phenoxy Acid Herbicide Mineralization and Growth of Microbial Degraders in 15 Soils Monitored by Quantitative Real-Time PCR of the Functional tfdA Gene von BAELUM, Jacob, PRESTAT, Emmanuel, DAVID, Maude M, STROBEL, Bjarne W, JACOBSEN, Carsten S

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Sex shapes gut–microbiota–brain communication and disease von Hokanson, Kenton C., Hernández, Caroline, Deitzler, Grace E., Gaston, Jenna E., David, Maude M.

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Revealing General Patterns of Microbiomes That Transcend Systems: Potential and Challenges of Deep Transfer Learning von David, Maude M, Tataru, Christine, Pope, Quintin, Baker, Lydia J, English, Mary K, Epstein, Hannah E, Hammer, Austin, Kent, Michael, Sieler, Jr, Michael J, Mueller, Ryan S, Sharpton, Thomas J, Tomas, Fiona, Vega Thurber, Rebecca, Fern, Xiaoli Z

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In situ TCE degradation mediated by complex dehalorespiring communities during biostimulation processes von Dugat‐Bony, Eric, Biderre‐Petit, Corinne, Jaziri, Faouzi, David, Maude M., Denonfoux, Jérémie, Lyon, Delina Y., Richard, Jean‐Yves, Curvers, Cyrille, Boucher, Delphine, Vogel, Timothy M., Peyretaillade, Eric, Peyret, Pierre

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The Role of the Microbiome in Autism: All That We Know about All That We Don’t Know von David, Maude M.

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FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focus von Prestat, Emmanuel, David, Maude M, Hultman, Jenni, Taş, Neslihan, Lamendella, Regina, Dvornik, Jill, Mackelprang, Rachel, Myrold, David D, Jumpponen, Ari, Tringe, Susannah G, Holman, Elizabeth, Mavromatis, Konstantinos, Jansson, Janet K

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Comparative phylogenetic microarray analysis of microbial communities in TCE-contaminated soils von Nemir, Audra, David, Maude M., Perrussel, Ronan, Sapkota, Amy, Simonet, Pascal, Monier, Jean-Michel, Vogel, Timothy M.

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