TPMCalculator: one-step software to quantify mRNA abundance of genomic features von Vera Alvarez, Roberto, Pongor, Lorinc Sandor, Mariño-Ramírez, Leonardo, Landsman, David

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COG database update: focus on microbial diversity, model organisms, and widespread pathogens von Galperin, Michael Y, Wolf, Yuri I, Makarova, Kira S, Vera Alvarez, Roberto, Landsman, David, Koonin, Eugene V

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Database resources of the National Center for Biotechnology Information von Agarwala, Richa, Barrett, Tanya, Beck, Jeff, Benson, Dennis A, Bollin, Colleen, Bolton, Evan, Bourexis, Devon, Brister, J Rodney, Bryant, Stephen H, Canese, Kathi, Cavanaugh, Mark, Charowhas, Chad, Clark, Karen, Dondoshansky, Ilya, Feolo, Michael, Fitzpatrick, Lawrence, Funk, Kathryn, Geer, Lewis Y, Gorelenkov, Viatcheslav, Graeff, Alan, Hlavina, Wratko, Holmes, Brad, Johnson, Mark, Kattman, Brandi, Khotomlianski, Viatcheslav, Kimchi, Avi, Kimelman, Michael, Kimura, Masato, Kitts, Paul, Klimke, William, Kotliarov, Alex, Krasnov, Sergey, Kuznetsov, Anatoliy, Landrum, Melissa J, Landsman, David, Lathrop, Stacy, Lee, Jennifer M, Leubsdorf, Carl, Lu, Zhiyong, Madden, Thomas L, Marchler-Bauer, Aron, Malheiro, Adriana, Meric, Peter, Karsch-Mizrachi, Ilene, Mnev, Anatoly, Murphy, Terence, Orris, Rebecca, Ostell, James, O'Sullivan, Christopher, Palanigobu, Vasuki, Panchenko, Anna R, Phan, Lon, Pierov, Borys, Pruitt, Kim D, Rodarmer, Kurt, Sayers, Eric W, Schneider, Valerie, Schoch, Conrad L, Schuler, Gregory D, Sherry, Stephen T, Siyan, Karanjit, Soboleva, Alexandra, Soussov, Vladimir, Starchenko, Grigory, Tatusova, Tatiana A, Thibaud-Nissen, Francoise, Todorov, Kamen, Trawick, Bart W, Vakatov, Denis, Ward, Minghong, Yaschenko, Eugene, Zasypkin, Aleksandr, Zbicz, Kerry

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Nucleosome adaptability conferred by sequence and structural variations in histone H2A–H2B dimers von Shaytan, Alexey K, Landsman, David, Panchenko, Anna R

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A unified phylogeny-based nomenclature for histone variants von Talbert, Paul B, Ahmad, Kami, Almouzni, Geneviève, Ausió, Juan, Berger, Frederic, Bhalla, Prem L, Bonner, William M, Cande, W Zacheus, Chadwick, Brian P, Chan, Simon W L, Cross, George A M, Cui, Liwang, Dimitrov, Stefan I, Doenecke, Detlef, Eirin-López, José M, Gorovsky, Martin A, Hake, Sandra B, Hamkalo, Barbara A, Holec, Sarah, Jacobsen, Steven E, Kamieniarz, Kinga, Khochbin, Saadi, Ladurner, Andreas G, Landsman, David, Latham, John A, Loppin, Benjamin, Malik, Harmit S, Marzluff, William F, Pehrson, John R, Postberg, Jan, Schneider, Robert, Singh, Mohan B, Smith, M Mitchell, Thompson, Eric, Torres-Padilla, Maria-Elena, Tremethick, David John, Turner, Bryan M, Waterborg, Jakob Harm, Wollmann, Heike, Yelagandula, Ramesh, Zhu, Bing, Henikoff, Steven

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Banana (Musa acuminata) transcriptome profiling in response to rhizobacteria: Bacillus amyloliquefaciens Bs006 and Pseudomonas fluorescens Ps006 von Gamez, Rocío M, Rodríguez, Fernando, Vidal, Newton Medeiros, Ramirez, Sandra, Vera Alvarez, Roberto, Landsman, David, Mariño-Ramírez, Leonardo

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Database resources of the National Center for Biotechnology Information von Sayers, Eric W, Barrett, Tanya, Benson, Dennis A, Bolton, Evan, Bryant, Stephen H, Canese, Kathi, Chetvernin, Vyacheslav, Church, Deanna M, DiCuccio, Michael, Federhen, Scott, Feolo, Michael, Geer, Lewis Y, Helmberg, Wolfgang, Kapustin, Yuri, Landsman, David, Lipman, David J, Lu, Zhiyong, Madden, Thomas L, Madej, Tom, Maglott, Donna R, Marchler-Bauer, Aron, Miller, Vadim, Mizrachi, Ilene, Ostell, James, Panchenko, Anna, Pruitt, Kim D, Schuler, Gregory D, Sequeira, Edwin, Sherry, Stephen T, Shumway, Martin, Sirotkin, Karl, Slotta, Douglas, Souvorov, Alexandre, Starchenko, Grigory, Tatusova, Tatiana A, Wagner, Lukas, Wang, Yanli, John Wilbur, W, Yaschenko, Eugene, Ye, Jian

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Genome-wide DNA methylation patterns in LSH mutant reveals de-repression of repeat elements and redundant epigenetic silencing pathways von Yu, Weishi, McIntosh, Carl, Lister, Ryan, Zhu, Iris, Han, Yixing, Ren, Jianke, Landsman, David, Lee, Eunice, Briones, Victorino, Terashima, Minoru, Leighty, Robert, Ecker, Joseph R, Muegge, Kathrin

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Role of the pre-initiation complex in Mediator recruitment and dynamics von Knoll, Elisabeth R, Zhu, Z Iris, Sarkar, Debasish, Landsman, David, Morse, Randall H

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Clustered and diverse transcription factor binding underlies cell type specificity of enhancers for housekeeping genes von Zhu, Iris, Landsman, David

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Cohort profile: St. Michael's Hospital Tuberculosis Database (SMH-TB), a retrospective cohort of electronic health record data and variables extracted using natural language proces... von Landsman, David, Abdelbasit, Ahmed, Wang, Christine, Guerzhoy, Michael, Joshi, Ujash, Mathew, Shaun, Pou-Prom, Chloe, Dai, David, Pequegnat, Victoria, Murray, Joshua, Chokar, Kamalprit, Banning, Michaelia, Mamdani, Muhammad, Mishra, Sharmistha, Batt, Jane

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A standardized nomenclature for mammalian histone genes von Seal, Ruth L, Denny, Paul, Bruford, Elspeth A, Gribkova, Anna K, Landsman, David, Marzluff, William F, McAndrews, Monica, Panchenko, Anna R, Shaytan, Alexey K, Talbert, Paul B

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Multiple epigenetic factors co-localize with HMGN proteins in A-compartment chromatin von He, Bing, Zhu, Iris, Postnikov, Yuri, Furusawa, Takashi, Jenkins, Lisa, Nanduri, Ravikanth, Bustin, Michael, Landsman, David

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The Physalis peruviana leaf transcriptome: assembly, annotation and gene model prediction von Garzón-Martínez, Gina A, Zhu, Z Iris, Landsman, David, Barrero, Luz S, Mariño-Ramírez, Leonardo

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BAMscale: quantification of next-generation sequencing peaks and generation of scaled coverage tracks von Pongor, Lorinc S., Gross, Jacob M., Vera Alvarez, Roberto, Murai, Junko, Jang, Sang-Min, Zhang, Hongliang, Redon, Christophe, Fu, Haiqing, Huang, Shar-Yin, Thakur, Bhushan, Baris, Adrian, Marino-Ramirez, Leonardo, Landsman, David, Aladjem, Mirit I., Pommier, Yves

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High-resolution genome-wide mapping of histone modifications von Roh, T.Y, Ngau, W.C, Cui, K, Landsman, D, Zhao, K

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Identification of immunity related genes to study the Physalis peruviana--Fusarium oxysporum pathosystem von Enciso-Rodríguez, Felix E, González, Carolina, Rodríguez, Edwin A, López, Camilo E, Landsman, David, Barrero, Luz Stella, Mariño-Ramírez, Leonardo

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HMGN1 Modulates Nucleosome Occupancy and DNase I Hypersensitivity at the CpG Island Promoters of Embryonic Stem Cells von Deng, Tao, Zhu, Z. Iris, Zhang, Shaofei, Leng, Fenfei, Cherukuri, Srujana, Hansen, Loren, Mariño-Ramírez, Leonardo, Meshorer, Eran, Landsman, David, Bustin, Michael

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MS_HistoneDB, a manually curated resource for proteomic analysis of human and mouse histones von El Kennani, Sara, Adrait, Annie, Shaytan, Alexey K, Khochbin, Saadi, Bruley, Christophe, Panchenko, Anna R, Landsman, David, Pflieger, Delphine, Govin, Jérôme

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COVID-19 Cases Among Congregate Care Facility Staff by Neighborhood of Residence and Social and Structural Determinants: Observational Study von Ma, Huiting, Yiu, Kristy C Y, Baral, Stefan D, Fahim, Christine, Moloney, Gary, Darvin, Dariya, Landsman, David, Chan, Adrienne K, Straus, Sharon, Mishra, Sharmistha

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