A rooted phylogeny resolves early bacterial evolution von Coleman, Gareth A, Davín, Adrián A, Mahendrarajah, Tara A, Szánthó, Lénárd L, Spang, Anja, Hugenholtz, Philip, Szöllősi, Gergely J, Williams, Tom A

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A standardized archaeal taxonomy for the Genome Taxonomy Database von Rinke, Christian, Chuvochina, Maria, Mussig, Aaron J., Chaumeil, Pierre-Alain, Davín, Adrián A., Waite, David W., Whitman, William B., Parks, Donovan H., Hugenholtz, Philip

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ATP synthase evolution on a cross-braced dated tree of life von Mahendrarajah, Tara A., Moody, Edmund R. R., Schrempf, Dominik, Szánthó, Lénárd L., Dombrowski, Nina, Davín, Adrián A., Pisani, Davide, Donoghue, Philip C. J., Szöllősi, Gergely J., Williams, Tom A., Spang, Anja

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Zombi: a phylogenetic simulator of trees, genomes and sequences that accounts for dead linages von Davín, Adrián A, Tricou, Théo, Tannier, Eric, de Vienne, Damien M, Szöllősi, Gergely J

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RecPhyloXML: a format for reconciled gene trees von Duchemin, Wandrille, Gence, Guillaume, Arigon Chifolleau, Anne-Muriel, Arvestad, Lars, Bansal, Mukul S, Berry, Vincent, Boussau, Bastien, Chevenet, François, Comte, Nicolas, Davín, Adrián A, Dessimoz, Christophe, Dylus, David, Hasic, Damir, Mallo, Diego, Planel, Rémi, Posada, David, Scornavacca, Celine, Szöllősi, Gergely, Zhang, Louxin, Tannier, Éric, Daubin, Vincent

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Gene transfers can date the tree of life von Davín, Adrián A., Tannier, Eric, Williams, Tom A., Boussau, Bastien, Daubin, Vincent, Szöllősi, Gergely J.

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Genome-scale phylogenetic analysis finds extensive gene transfer among fungi von Szöllősi, Gergely J., Davín, Adrián Arellano, Tannier, Eric, Daubin, Vincent, Boussau, Bastien

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Relative Time Inference Using Lateral Gene Transfers von Davín, Adrián A., Schrempf, Dominik, Williams, Tom A., Hugenholtz, Philip, Szöllősi, Gergely J.

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Parameter Estimation and Species Tree Rooting Using ALE and GeneRax von Williams, Tom A, Davín, Adrián A, Morel, Benoit, Szánthó, Lénárd L, Spang, Anja, Stamatakis, Alexandros, Hugenholtz, Philip, Szöllősi, Gergely J

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Rooting Species Trees Using Gene Tree-Species Tree Reconciliation von Harris, Brogan J., Sheridan, Paul O., Davín, Adrián A., Gubry-Rangin, Cécile, Szöllősi, Gergely J., Williams, Tom A.

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Genome-scale phylogenetic analysis finds extensive gene transfer among fungi von Szöllősi, Gergely J., Davín, Adrián Arellano, Tannier, Eric, Daubin, Vincent, Boussau, Bastien

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Phylogenetic reconciliation: making the most of genomes to understand microbial ecology and evolution von Williams, Tom A, Davin, Adrian A, Szánthó, Lénárd L, Stamatakis, Alexandros, Wahl, Noah A, Woodcroft, Ben J, Soo, Rochelle M, Eme, Laura, Sheridan, Paul O, Gubry-Rangin, Cecile, Spang, Anja, Hugenholtz, Philip, Szöllősi, Gergely J

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Data and code for "A geological timescale for bacterial evolution and oxygen adaptation" von Szollosi, Gergely J, Williams, Tom, Davín, Adrián, Woodcroft, Ben J.

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Extended Data for A rooted phylogeny resolves early bacterial evolution von Coleman, Gareth, Davín, Adrián, Mahendrarajah, Tara, Spang, Anja, Hugenholtz, Philip, Szöllősi, Gergely J., Williams, Tom

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Extended Data for A rooted phylogeny resolves early bacterial evolution von Coleman, Gareth, Davín, Adrián, Mahendrarajah, Tara, Spang, Anja, Hugenholtz, Philip, Szöllősi, Gergely J., Williams, Tom

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Dating trees with lateral gene transfers von Davín, Adrián, Szöllősi, Gergely J., Williams, Tom, Schrempf, Dominik, Hugenholtz, Philip

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Zombi: A phylogenetic simulator of trees, genomes and sequences that accounts for dead lineages von Davin, Adrian A, Tricou, Theo, Tannier, Eric, de Vienne, Damien M., Szöllosi, Gergely J

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ATP synthase evolution on a cross-braced dated tree of life von Mahendrarajah, Tara A, Moody, Edmund RR, Schrempf, Dominik, Szántho, Lénárd L, Dombrowski, Nina, Davín, Adrián A, Pisani, Davide, Donoghue, Philip CJ, Szöllősi, Gergely J, Williams, Tom A, Spang, Anja

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Genome-scale phylogenetic analysis finds extensive gene transfer among Fungi von Szöllősi, Gergely J, Davín, Adrián Arellano, Tannier, Eric, Daubin, Vincent, Boussau, Bastien

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Data from: Genome-scale phylogenetic analysis finds extensive gene transfer among fungi von Szöllősi, Gergely J., Arellano Davín, Adrián, Tannier, Eric, Daubin, Vincent, Boussau, Bastien

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