The complete folding pathway of a protein from nanoseconds to microseconds von Fersht, Alan R, Mayor, Ugo, Guydosh, Nicholas R, Johnson, Christopher M, Grossmann, J. Günter, Sato, Satoshi, Jas, Gouri S, Freund, Stefan M. V, Alonso, Darwin O. V, Daggett, Valerie

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Pauling and Corey's α-Pleated Sheet Structure May Define the Prefibrillar Amyloidogenic Intermediate in Amyloid Disease von Armen, Roger S., DeMarco, Mari L., Darwin O. V. Alonso, Daggett, Valerie, Fersht, Alan

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intrinsic conformational propensities of the 20 naturally occurring amino acids and reflection of these propensities in proteins von Beck, David A.C, Alonso, Darwin O.V, Inoyama, Daigo, Daggett, Valerie

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Characterization of a Possible Amyloidogenic Precursor in Glutamine-Repeat Neurodegenerative Diseases von Armen, Roger S., Bernard, Brady M., Day, Ryan, Darwin O. V. Alonso, Daggett, Valerie, Fersht, Alan R.

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Conformational entropy of alanine versus glycine in protein denatured states von Scott, Kathryn A, Alonso, Darwin O.V, Sato, Satoshi, Fersht, Alan R, Daggett, Valerie

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Hydrophobic Hydration Is an Important Source of Elasticity in Elastin-Based Biopolymers von Li, Bin, Alonso, Darwin O. V, Bennion, Brian J, Daggett, Valerie

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Mapping the Early Steps in the pH-Induced Conformational Conversion of the Prion Protein von Darwin O. V. Alonso, DeArmond, Stephen J., Cohen, Fred E., Daggett, Valerie

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Dynameomics: mass annotation of protein dynamics and unfolding in water by high-throughput atomistic molecular dynamics simulations von Beck, David A.C., Jonsson, Amanda L., Schaeffer, R. Dustin, Scott, Kathryn A., Day, Ryan, Toofanny, Rudesh D., Alonso, Darwin O.V., Daggett, Valerie

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Importance of Context in Protein Folding:  Secondary Structural Propensities versus Tertiary Contact-Assisted Secondary Structure Formation von Scott, Kathryn A, Alonso, Darwin O. V, Pan, Yongping, Daggett, Valerie

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Simulations of biomolecules: characterization of the early steps in the pH-induced conformational conversion of the hamster, bovine and human forms of the prion protein von Alonso, Darwin O. V., An, Chahm, Daggett, Valerie

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Ultrafast Folding of α3D: A de novo Designed Three-Helix Bundle Protein von Zhu, Yongjin, Darwin O. V. Alonso, Maki, Kosuke, Huang, Cheng-Yen, Lahr, Steven J., Daggett, Valerie, Roder, Heinrich, DeGrado, William F., Gai, Feng

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Staphylococcal Protein A: Unfolding Pathways, Unfolded States, and Differences between the B and E Domains von Darwin O. V. Alonso, Daggett, Valerie

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A comparison of substrate dynamics in human CYP2E1 and CYP2A6 von Harrelson, John P., Henne, Kirk R., Alonso, Darwin O.V., Nelson, Sidney D.

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Solvent denaturation and stabilization of globular proteins von Alonso, Darwin O. V, Dill, Ken A

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Simulations of Macromolecules in Protective and Denaturing Osmolytes: Properties of Mixed Solvent Systems and Their Effects on Water and Protein Structure and Dynamics von Beck, David A.C., Bennion, Brian J., Alonso, Darwin O.V., Daggett, Valerie

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Thermal stabilities of globular proteins von Dill, Ken A, Alonso, Darwin O. V, Hutchinson, Karen

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The role of alpha-, 3(10)-, and pi-helix in helix-->coil transitions von Armen, Roger, Alonso, Darwin O V, Daggett, Valerie

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Anatomy of an Amyloidogenic Intermediate: Conversion of β-Sheet to α-Sheet Structure in Transthyretin at Acidic pH von Armen, Roger S., Alonso, Darwin O.V., Daggett, Valerie

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The hydration of amides in helices; a comprehensive picture from molecular dynamics, IR, and NMR von Walsh, Scott T.R., Cheng, Richard P., Wright, Wayne W., Alonso, Darwin O.V., Daggett, Valerie, Vanderkooi, Jane M., DeGrado, William F.

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The three states of globular proteins: Acid denaturation von Alonso, Darwin O. V., Dill, Ken A., Stigter, Dirk

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