Negative interactions determine Clostridioides difficile growth in synthetic human gut communities von Hromada, Susan, Qian, Yili, Jacobson, Tyler B, Clark, Ryan L, Watson, Lauren, Safdar, Nasia, Amador‐Noguez, Daniel, Venturelli, Ophelia S

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Intestinal microbiota composition modulates choline bioavailability from diet and accumulation of the proatherogenic metabolite trimethylamine-N-oxide von Romano, Kymberleigh A, Vivas, Eugenio I, Amador-Noguez, Daniel, Rey, Federico E

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Recent applications of metabolomics to advance microbial biofuel production von Martien, Julia I, Amador-Noguez, Daniel

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Metabolite concentrations, fluxes and free energies imply efficient enzyme usage von Park, Junyoung O, Rubin, Sara A, Xu, Yi-Fan, Amador-Noguez, Daniel, Fan, Jing, Shlomi, Tomer, Rabinowitz, Joshua D

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Design of synthetic human gut microbiome assembly and butyrate production von Clark, Ryan L., Connors, Bryce M., Stevenson, David M., Hromada, Susan E., Hamilton, Joshua J., Amador-Noguez, Daniel, Venturelli, Ophelia S.

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Metabolic, Epigenetic, and Transgenerational Effects of Gut Bacterial Choline Consumption von Romano, Kymberleigh A., Martinez-del Campo, Ana, Kasahara, Kazuyuki, Chittim, Carina L., Vivas, Eugenio I., Amador-Noguez, Daniel, Balskus, Emily P., Rey, Federico E.

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Metabolomic Analysis via Reversed-Phase Ion-Pairing Liquid Chromatography Coupled to a Stand Alone Orbitrap Mass Spectrometer von Lu, Wenyun, Clasquin, Michelle F, Melamud, Eugene, Amador-Noguez, Daniel, Caudy, Amy A, Rabinowitz, Joshua D

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The nucleotide pGpp acts as a third alarmone in Bacillus, with functions distinct from those of (p)ppGpp von Yang, Jin, Anderson, Brent W., Turdiev, Asan, Turdiev, Husan, Stevenson, David M., Amador-Noguez, Daniel, Lee, Vincent T., Wang, Jue D.

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Metabolic Remodeling during Biofilm Development of Bacillus subtilis von Pisithkul, Tippapha, Schroeder, Jeremy W, Trujillo, Edna A, Yeesin, Ponlkrit, Stevenson, David M, Chaiamarit, Tai, Coon, Joshua J, Wang, Jue D, Amador-Noguez, Daniel

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Stoichiometry of Site-specific Lysine Acetylation in an Entire Proteome von Baeza, Josue, Dowell, James A., Smallegan, Michael J., Fan, Jing, Amador-Noguez, Daniel, Khan, Zia, Denu, John M.

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Evidence for an Alternative Glycolytic Pathway in Rapidly Proliferating Cells von Vander Heiden, Matthew G, Locasale, Jason W, Swanson, Kenneth D, Sharfi, Hadar, Heffron, Greg J, Amador-Noguez, Daniel, Christofk, Heather R, Wagner, Gerhard, Rabinowitz, Joshua D, Asara, John M, Cantley, Lewis C

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Post-translational modifications as key regulators of bacterial metabolic fluxes von Pisithkul, Tippapha, Patel, Nishaben M, Amador-Noguez, Daniel

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Metabolic flux analysis and fluxomics-driven determination of reaction free energy using multiple isotopes von Xu, Jimmy, Martien, Julia, Gilbertson, Cole, Ma, Junyu, Amador-Noguez, Daniel, Park, Junyoung O

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Genetic determinants of gut microbiota composition and bile acid profiles in mice von Kemis, Julia H, Linke, Vanessa, Barrett, Kelsey L, Boehm, Frederick J, Traeger, Lindsay L, Keller, Mark P, Rabaglia, Mary E, Schueler, Kathryn L, Stapleton, Donald S, Gatti, Daniel M, Churchill, Gary A, Amador-Noguez, Daniel, Russell, Jason D, Yandell, Brian S, Broman, Karl W, Coon, Joshua J, Attie, Alan D, Rey, Federico E

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Dual metabolomic profiling uncovers Toxoplasma manipulation of the host metabolome and the discovery of a novel parasite metabolic capability von Olson, William J, Martorelli Di Genova, Bruno, Gallego-Lopez, Gina, Dawson, Anthony R, Stevenson, David, Amador-Noguez, Daniel, Knoll, Laura J

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Metabolome Remodeling during the Acidogenic-Solventogenic Transition in Clostridium acetobutylicum von AMADOR-NOGUEZ, Daniel, BRASG, Ian A, FENG, Xiao-Jiang, ROQUET, Nathaniel, RABINOWITZ, Joshua D

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Molecular Mechanism and Evolution of Guanylate Kinase Regulation by (p)ppGpp von Liu, Kuanqing, Myers, Angela R., Pisithkul, Tippapha, Claas, Kathy R., Satyshur, Kenneth A., Amador-Noguez, Daniel, Keck, James L., Wang, Jue D.

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Small Alarmone Synthetase SasA Expression Leads to Concomitant Accumulation of pGpp, ppApp, and AppppA in Bacillus subtilis von Fung, Danny K., Yang, Jin, Stevenson, David M., Amador-Noguez, Daniel, Wang, Jue D.

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Alterations in xenobiotic metabolism in the long‐lived Little mice von Amador‐Noguez, Daniel, Dean, Adam, Huang, Wendong, Setchell, Kenneth, Moore, David, Darlington, Gretchen

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Systems-Level Metabolic Flux Profiling Elucidates a Complete, Bifurcated Tricarboxylic Acid Cycle in Clostridium acetobutylicum von Amador-Noguez, Daniel, Feng, Xiao-Jiang, Fan, Jing, Roquet, Nathaniel, Rabitz, Herschel, Rabinowitz, Joshua D

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