iLearnPlus: a comprehensive and automated machine-learning platform for nucleic acid and protein sequence analysis, prediction and visualization von Chen, Zhen, Zhao, Pei, Li, Chen, Li, Fuyi, Xiang, Dongxu, Chen, Yong-Zi, Akutsu, Tatsuya, Daly, Roger J, Webb, Geoffrey I, Zhao, Quanzhi, Kurgan, Lukasz, Song, Jiangning

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iFeature: a Python package and web server for features extraction and selection from protein and peptide sequences von Chen, Zhen, Zhao, Pei, Li, Fuyi, Leier, André, Marquez-Lago, Tatiana T, Wang, Yanan, Webb, Geoffrey I, Smith, A Ian, Daly, Roger J, Chou, Kuo-Chen, Song, Jiangning

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iLearn: an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data von Chen, Zhen, Zhao, Pei, Li, Fuyi, Marquez-Lago, Tatiana T, Leier, André, Revote, Jerico, Zhu, Yan, Powell, David R, Akutsu, Tatsuya, Webb, Geoffrey I, Chou, Kuo-Chen, Smith, A Ian, Daly, Roger J, Li, Jian, Song, Jiangning

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Quokka: a comprehensive tool for rapid and accurate prediction of kinase family-specific phosphorylation sites in the human proteome von Li, Fuyi, Li, Chen, Marquez-Lago, Tatiana T, Leier, André, Akutsu, Tatsuya, Purcell, Anthony W, Ian Smith, A, Lithgow, Trevor, Daly, Roger J, Song, Jiangning, Chou, Kuo-Chen

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Dual-specificity phosphatases: critical regulators with diverse cellular targets von Patterson, Kate I, Brummer, Tilman, O'Brien, Philippa M, Daly, Roger J

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Enhancing therapeutic anti-cancer responses by combining immune checkpoint and tyrosine kinase inhibition von Daly, Roger J, Scott, Andrew M, Klein, Oliver, Ernst, Matthias

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Proteomic Profiling of Human Prostate Cancer-associated Fibroblasts (CAF) Reveals LOXL2-dependent Regulation of the Tumor Microenvironment[S] von Nguyen, Elizabeth V., Pereira, Brooke A., Lawrence, Mitchell G., Ma, Xiuquan, Rebello, Richard J., Chan, Howard, Niranjan, Birunthi, Wu, Yunjian, Ellem, Stuart, Guan, Xiaoqing, Wu, Jianmin, Skhinas, Joanna N., Cox, Thomas R., Risbridger, Gail P., Taylor, Renea A., Lister, Natalie L., Daly, Roger J.

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Cortactin signalling and dynamic actin networks von Daly, Roger J

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A robust methodology to subclassify pseudokinases based on their nucleotide-binding properties von Murphy, James M, Zhang, Qingwei, Young, Samuel N, Reese, Michael L, Bailey, Fiona P, Eyers, Patrick A, Ungureanu, Daniela, Hammaren, Henrik, Silvennoinen, Olli, Varghese, Leila N, Chen, Kelan, Tripaydonis, Anne, Jura, Natalia, Fukuda, Koichi, Qin, Jun, Nimchuk, Zachary, Mudgett, Mary Beth, Elowe, Sabine, Gee, Christine L, Liu, Ling, Daly, Roger J, Manning, Gerard, Babon, Jeffrey J, Lucet, Isabelle S

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PhosphoPredict: A bioinformatics tool for prediction of human kinase-specific phosphorylation substrates and sites by integrating heterogeneous feature selection von Song, Jiangning, Wang, Huilin, Wang, Jiawei, Leier, André, Marquez-Lago, Tatiana, Yang, Bingjiao, Zhang, Ziding, Akutsu, Tatsuya, Webb, Geoffrey I., Daly, Roger J.

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INPP4B promotes PI3Kα-dependent late endosome formation and Wnt/β-catenin signaling in breast cancer von Rodgers, Samuel J., Ooms, Lisa M., Oorschot, Viola M. J., Schittenhelm, Ralf B., Nguyen, Elizabeth V., Hamila, Sabryn A., Rynkiewicz, Natalie, Gurung, Rajendra, Eramo, Matthew J., Sriratana, Absorn, Fedele, Clare G., Caramia, Franco, Loi, Sherene, Kerr, Genevieve, Abud, Helen E., Ramm, Georg, Papa, Antonella, Ellisdon, Andrew M., Daly, Roger J., McLean, Catriona A., Mitchell, Christina A.

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Enduring epigenetic landmarks define the cancer microenvironment von Pidsley, Ruth, Lawrence, Mitchell G, Zotenko, Elena, Niranjan, Birunthi, Statham, Aaron, Song, Jenny, Chabanon, Roman M, Qu, Wenjia, Wang, Hong, Richards, Michelle, Nair, Shalima S, Armstrong, Nicola J, Nim, Hieu T, Papargiris, Melissa, Balanathan, Preetika, French, Hugh, Peters, Timothy, Norden, Sam, Ryan, Andrew, Pedersen, John, Kench, James, Daly, Roger J, Horvath, Lisa G, Stricker, Phillip, Frydenberg, Mark, Taylor, Renea A, Stirzaker, Clare, Risbridger, Gail P, Clark, Susan J

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AXL confers cell migration and invasion by hijacking a PEAK1-regulated focal adhesion protein network von Abu-Thuraia, Afnan, Goyette, Marie-Anne, Boulais, Jonathan, Delliaux, Carine, Apcher, Chloé, Schott, Céline, Chidiac, Rony, Bagci, Halil, Thibault, Marie-Pier, Davidson, Dominique, Ferron, Mathieu, Veillette, André, Daly, Roger J., Gingras, Anne-Claude, Gratton, Jean-Philippe, Côté, Jean-François

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FGFR3 signaling and function in triple negative breast cancer von Chew, Nicole J, Nguyen, Elizabeth V, Su, Shih-Ping, Novy, Karel, Chan, Howard C, Nguyen, Lan K, Luu, Jennii, Simpson, Kaylene J, Lee, Rachel S, Daly, Roger J

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Twenty years of bioinformatics research for protease-specific substrate and cleavage site prediction: a comprehensive revisit and benchmarking of existing methods von Li, Fuyi, Wang, Yanan, Li, Chen, Marquez-Lago, Tatiana T, Leier, André, Rawlings, Neil D, Haffari, Gholamreza, Revote, Jerico, Akutsu, Tatsuya, Chou, Kuo-Chen, Purcell, Anthony W, Pike, Robert N, Webb, Geoffrey I, Ian Smith, A, Lithgow, Trevor, Daly, Roger J, Whisstock, James C, Song, Jiangning

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Pediatric glioma histone H3.3 K27M/G34R mutations drive abnormalities in PML nuclear bodies von Voon, Hsiao P J, Hii, Linda, Garvie, Andrew, Udugama, Maheshi, Krug, Brian, Russo, Caterina, Chüeh, Anderly C, Daly, Roger J, Morey, Alison, Bell, Toby D M, Turner, Stephen J, Rosenbluh, Joseph, Daniel, Paul, Firestein, Ron, Mann, Jeffrey R, Collas, Philippe, Jabado, Nada, Wong, Lee H

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CRISPRi enables isoform-specific loss-of-function screens and identification of gastric cancer-specific isoform dependencies von Davies, Rebecca, Liu, Ling, Taotao, Sheng, Tuano, Natasha, Chaturvedi, Richa, Huang, Kie Kyon, Itman, Catherine, Mandoli, Amit, Qamra, Aditi, Hu, Changyuan, Powell, David, Daly, Roger J, Tan, Patrick, Rosenbluh, Joseph

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Proteome‐based molecular subtyping and therapeutic target prediction in gastric cancer von Hu, Changyuan, Song, Jiangning, Kwok, Terry, Nguyen, Elizabeth V., Shen, Xian, Daly, Roger J.

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Grb7, Grb10 and Grb14, encoding the growth factor receptor-bound 7 family of signalling adaptor proteins have overlapping functions in the regulation of fetal growth and post-natal... von Moorwood, Kim, Smith, Florentia M, Garfield, Alastair S, Cowley, Michael, Holt, Lowenna J, Daly, Roger J, Ward, Andrew

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Function, regulation and pathological roles of the Gab/DOS docking proteins von Wöhrle, Franziska U, Daly, Roger J, Brummer, Tilman

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