Metagenomic Analyses Reveal the Influence of Depth Layers on Marine Biodiversity on Tropical and Subtropical Regions von Santiago, Bianca C F, de Souza, Iara D, Cavalcante, João Vitor F, Morais, Diego A A, da Silva, Mikaelly B, Pasquali, Matheus Augusto de B, Dalmolin, Rodrigo J S

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Sex-specific gene expression differences in the prefrontal cortex of major depressive disorder individuals von de Souza, Iara D., G. S. Fernandes, Vítor, Vitor F. Cavalcante, João, Carolina M. F. Coelho, Ana, A. A. Morais, Diego, Cabral-Marques, Otavio, A. B. Pasquali, Matheus, J. S. Dalmolin, Rodrigo

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Prediction of long noncoding RNA functions with co-expression network in esophageal squamous cell carcinoma von Hao, Yibin, Wu, Wei, Shi, Fachun, Dalmolin, Rodrigo J S, Yan, Ming, Tian, Fu, Chen, Xiaobing, Chen, Guoyong, Cao, Wei

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ViaComplex: software for landscape analysis of gene expression networks in genomic context von Castro, Mauro A. A., Filho, José L. Rybarczyk, Dalmolin, Rodrigo J. S., Sinigaglia, Marialva, Moreira, José C. F., Mombach, José C. M., de Almeida, Rita M. C.

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Correction: preferential duplication of intermodular hub genes: an evolutionary signature in eukaryotes genome networks von Ferreira, Ricardo M, Rybarczyk-Filho, José Luiz, Dalmolin, Rodrigo J S, Castro, Mauro A A, Moreira, José C F, Brunnet, Leonardo G, de Almeida, Rita M C

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MEDUSA: A Pipeline for Sensitive Taxonomic Classification and Flexible Functional Annotation of Metagenomic Shotgun Sequences von Morais, Diego A A, Cavalcante, João V F, Monteiro, Shênia S, Pasquali, Matheus A B, Dalmolin, Rodrigo J S

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Towards a genome-wide transcriptogram: the Saccharomyces cerevisiae case von Rybarczyk-Filho, José Luiz, Castro, Mauro A A, Dalmolin, Rodrigo J S, Moreira, José C F, Brunnet, Leonardo G, de Almeida, Rita M C

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Severe COVID-19 patients exhibit elevated levels of autoantibodies targeting cardiolipin and platelet glycoprotein with age: a systems biology approach von Fonseca, Dennyson Leandro M., Filgueiras, Igor Salerno, Marques, Alexandre H. C., Vojdani, Elroy, Halpert, Gilad, Ostrinski, Yuri, Baiocchi, Gabriela Crispim, Plaça, Desirée Rodrigues, Freire, Paula P., Pour, Shahab Zaki, Moll, Guido, Catar, Rusan, Lavi, Yael Bublil, Silverberg, Jonathan I., Zimmerman, Jason, Cabral-Miranda, Gustavo, Carvalho, Robson F., Khan, Taj Ali, Heidecke, Harald, Dalmolin, Rodrigo J. S., Luchessi, Andre Ducati, Ochs, Hans D., Schimke, Lena F., Amital, Howard, Riemekasten, Gabriela, Zyskind, Israel, Rosenberg, Avi Z., Vojdani, Aristo, Shoenfeld, Yehuda, Cabral-Marques, Otavio

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Evolutionary origins of human apoptosis and genome-stability gene networks von Castro, Mauro A.A, Dalmolin, Rodrigo J.S, Moreira, José C.F, Mombach, José C.M, de Almeida, Rita M.C

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Systems Biology-Based Analysis Indicates Global Transcriptional Impairment in Lead-Treated Human Neural Progenitor Cells von Reis, Clovis F., de Souza, Iara D., Morais, Diego A. A., Oliveira, Raffael A. C., Imparato, Danilo O., de Almeida, Rita M. C., Dalmolin, Rodrigo J. S.

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Preferential duplication of intermodular hub genes: an evolutionary signature in eukaryotes genome networks von Ferreira, Ricardo M, Rybarczyk-Filho, José Luiz, Dalmolin, Rodrigo J S, Castro, Mauro A A, Moreira, José C F, Brunnet, Leonardo G, de Almeida, Rita M C

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Bridge: A New Algorithm for Rooting Orthologous Genes in Large-Scale Evolutionary Analyses von Campos, Leonardo R S, Trefflich, Sheyla, Morais, Diego A A, Imparato, Danilo O, Chagas, Vinicius S, Albanus, Ricardo D'Oliveira, Dalmolin, Rodrigo J S, Castro, Mauro A A

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Evolutionary plasticity determination by orthologous groups distribution von Dalmolin, Rodrigo J S, Castro, Mauro A A, Rybarczyk Filho, José L, Souza, Luis H T, de Almeida, Rita M C, Moreira, José C F

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TreeAndLeaf: an R/Bioconductor package for graphs and trees with focus on the leaves von Cardoso, Milena A, Rizzardi, Luis E A, Kume, Leonardo W, Groeneveld, Clarice S, Trefflich, Sheyla, Morais, Diego A A, Dalmolin, Rodrigo J S, Ponder, Bruce A J, Meyer, Kerstin B, Castro, Mauro A A

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Transcriptogramer: an R/Bioconductor package for transcriptional analysis based on protein-protein interaction von Morais, Diego A A, Almeida, Rita M C, Dalmolin, Rodrigo J S

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Which came first, the transcriptional regulator or its target genes? An evolutionary perspective into the construction of eukaryotic regulons von Trefflich, Sheyla, Dalmolin, Rodrigo J.S., Ortega, José Miguel, Castro, Mauro A.A.

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NFκB inhibitors induce cell death in glioblastomas von Zanotto-Filho, Alfeu, Braganhol, Elizandra, Schröder, Rafael, de Souza, Luís Henrique T., Dalmolin, Rodrigo J.S., Pasquali, Matheus A. Bittencourt, Gelain, Daniel Pens, Battastini, Ana Maria Oliveira, Moreira, José Cláudio Fonseca

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Ancestry analysis indicates two different sets of essential genes in eukaryotic model species von de Souza, Iara D., Reis, Clovis F., Morais, Diego A. A., Fernandes, Vítor G. S., Cavalcante, João Vitor F., Dalmolin, Rodrigo J. S.

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A systematic review of human antioxidant genes von Gelain, Daniel P, Dalmolin, Rodrigo J S, Belau, Vanessa L, Moreira, Jose C F, Klamt, Fabio, Castro, Mauro A A

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Retinoic acid induces apoptosis by a non-classical mechanism of ERK1/2 activation von Zanotto-Filho, Alfeu, Cammarota, Martin, Gelain, Daniel P., Oliveira, Ramatis B., Delgado-Cañedo, Andres, Dalmolin, Rodrigo J.S., Pasquali, Matheus A.B., Moreira, José Cláudio F.

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