RefSeq and the prokaryotic genome annotation pipeline in the age of metagenomes von Haft, Daniel H, Badretdin, Azat, Coulouris, George, DiCuccio, Michael, Durkin, A Scott, Jovenitti, Eric, Li, Wenjun, Mersha, Megdelawit, O’Neill, Kathleen R, Virothaisakun, Joel, Thibaud-Nissen, Françoise

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Major Structural Differences and Novel Potential Virulence Mechanisms from the Genomes of Multiple Campylobacter Species von Fouts, Derrick E, Mongodin, Emmanuel F, Mandrell, Robert E, Miller, William G, Rasko, David A, Ravel, Jacques, Brinkac, Lauren M, DeBoy, Robert T, Parker, Craig T, Daugherty, Sean C, Dodson, Robert J, Durkin, A. Scott, Madupu, Ramana, Sullivan, Steven A, Shetty, Jyoti U, Ayodeji, Mobolanle A, Shvartsbeyn, Alla, Schatz, Michael C, Badger, Jonathan H, Fraser, Claire M, Nelson, Karen E

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Comparative genomics of Gardnerella vaginalis strains reveals substantial differences in metabolic and virulence potential von Yeoman, Carl J, Yildirim, Suleyman, Thomas, Susan M, Durkin, A Scott, Torralba, Manolito, Sutton, Granger, Buhay, Christian J, Ding, Yan, Dugan-Rocha, Shannon P, Muzny, Donna M, Qin, Xiang, Gibbs, Richard A, Leigh, Steven R, Stumpf, Rebecca, White, Bryan A, Highlander, Sarah K, Nelson, Karen E, Wilson, Brenda A

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Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements von Wu, Martin, Sun, Ling V, Vamathevan, Jessica, Riegler, Markus, Deboy, Robert, Brownlie, Jeremy C, McGraw, Elizabeth A, Martin, William, Esser, Christian, Ahmadinejad, Nahal, Wiegand, Christian, Madupu, Ramana, Beanan, Maureen J, Brinkac, Lauren M, Daugherty, Sean C, Durkin, A Scott, Kolonay, James F, Nelson, William C, Mohamoud, Yasmin, Lee, Perris, Berry, Kristi, Young, M Brook, Utterback, Teresa, Weidman, Janice, Nierman, William C, Paulsen, Ian T, Nelson, Karen E, Tettelin, Hervé, O'Neill, Scott L, Eisen, Jonathan A

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Draft Genome Sequence of Turicibacter sanguinis PC909, Isolated from Human Feces von CUIV, Páraic O, KLAASSENS, Eline S, DURKIN, A. Scott, HARKINS, Derek M, FOSTER, Les, MCCORRISON, Jamison, TORRALBA, Manolito, NELSON, Karen E, MORRISON, Mark

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Genome Sequence of Synechococcus CC9311: Insights into Adaptation to a Coastal Environment von Palenik, Brian, Ren, Qinghu, Dupont, Chris L., Myers, Garry S., Heidelberg, John F., Badger, Jonathan H., Madupu, Ramana, Nelson, William C., Brinkac, Lauren M., Dodson, Robert J., Durkin, A. Scott, Daugherty, Sean C., Sullivan, Stephen A., Khouri, Hoda, Mohamoud, Yasmin, Halpin, Rebecca, Paulsen, Ian T.

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Life in hot carbon monoxide: the complete genome sequence of Carboxydothermus hydrogenoformans Z-2901 von Wu, Martin, Ren, Qinghu, Durkin, A Scott, Daugherty, Sean C, Brinkac, Lauren M, Dodson, Robert J, Madupu, Ramana, Sullivan, Steven A, Kolonay, James F, Haft, Daniel H, Nelson, William C, Tallon, Luke J, Jones, Kristine M, Ulrich, Luke E, Gonzalez, Juan M, Zhulin, Igor B, Robb, Frank T, Eisen, Jonathan A

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RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation von Li, Wenjun, O’Neill, Kathleen R, Haft, Daniel H, DiCuccio, Michael, Chetvernin, Vyacheslav, Badretdin, Azat, Coulouris, George, Chitsaz, Farideh, Derbyshire, Myra K, Durkin, A Scott, Gonzales, Noreen R, Gwadz, Marc, Lanczycki, Christopher J, Song, James S, Thanki, Narmada, Wang, Jiyao, Yamashita, Roxanne A, Yang, Mingzhang, Zheng, Chanjuan, Marchler-Bauer, Aron, Thibaud-Nissen, Françoise

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The complete genome of Teredinibacter turnerae T7901: an intracellular endosymbiont of marine wood-boring bivalves (shipworms) von Yang, Joyce C, Madupu, Ramana, Durkin, A Scott, Ekborg, Nathan A, Pedamallu, Chandra S, Hostetler, Jessica B, Radune, Diana, Toms, Bradley S, Henrissat, Bernard, Coutinho, Pedro M, Schwarz, Sandra, Field, Lauren, Trindade-Silva, Amaro E, Soares, Carlos A G, Elshahawi, Sherif, Hanora, Amro, Schmidt, Eric W, Haygood, Margo G, Posfai, Janos, Benner, Jack, Madinger, Catherine, Nove, John, Anton, Brian, Chaudhary, Kshitiz, Foster, Jeremy, Holman, Alex, Kumar, Sanjay, Lessard, Philip A, Luyten, Yvette A, Slatko, Barton, Wood, Nicole, Wu, Bo, Teplitski, Max, Mougous, Joseph D, Ward, Naomi, Eisen, Jonathan A, Badger, Jonathan H, Distel, Daniel L

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Complete Genome Sequence of the Broad-Host-Range Vibriophage KVP40: Comparative Genomics of a T4-Related Bacteriophage von Miller, Eric S, Heidelberg, John F, Eisen, Jonathan A, Nelson, William C, Durkin, A Scott, Ciecko, Ann, Feldblyum, Tamara V, White, Owen, Paulsen, Ian T, Nierman, William C, Lee, Jong, Szczypinski, Bridget, Fraser, Claire M

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Draft Genome Sequence of Bacteroides vulgatus PC510, a Strain Isolated from Human Feces von O CUIV, Paraic, KLAASSENS, Eline S, SCOTT DURKIN, A, HARKING, Derek M, FOSTER, Les, MCCORRISON, Jamison, TORRALBA, Manolito, NELSON, Karen E, MORRISON, Mark

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Complete Genome Sequences of Mycoplasma leachii Strain PG50T and the Pathogenic Mycoplasma mycoides subsp. mycoides Small Colony Biotype Strain Gladysdale von Wise, Kim S, Calcutt, Michael J, Foecking, Mark F, Madupu, Ramana, DeBoy, Robert T, Röske, Kerstin, Hvinden, Miranda L, Martin, Tara R, Durkin, A. Scott, Glass, John I, Methé, Barbara A

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Comparative genomics of plant-associated Pseudomonas spp.: insights into diversity and inheritance of traits involved in multitrophic interactions von Loper, Joyce E, Hassan, Karl A, Mavrodi, Dmitri V, Davis, 2nd, Edward W, Lim, Chee Kent, Shaffer, Brenda T, Elbourne, Liam D H, Stockwell, Virginia O, Hartney, Sierra L, Breakwell, Katy, Henkels, Marcella D, Tetu, Sasha G, Rangel, Lorena I, Kidarsa, Teresa A, Wilson, Neil L, van de Mortel, Judith E, Song, Chunxu, Blumhagen, Rachel, Radune, Diana, Hostetler, Jessica B, Brinkac, Lauren M, Durkin, A Scott, Kluepfel, Daniel A, Wechter, W Patrick, Anderson, Anne J, Kim, Young Cheol, Pierson, 3rd, Leland S, Pierson, Elizabeth A, Lindow, Steven E, Kobayashi, Donald Y, Raaijmakers, Jos M, Weller, David M, Thomashow, Linda S, Allen, Andrew E, Paulsen, Ian T

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Three Genomes from the Phylum Acidobacteria Provide Insight into the Lifestyles of These Microorganisms in Soils von Ward, Naomi L, Challacombe, Jean F, Janssen, Peter H, Henrissat, Bernard, Coutinho, Pedro M, Wu, Martin, Xie, Gary, Haft, Daniel H, Sait, Michelle, Badger, Jonathan, Barabote, Ravi D, Bradley, Brent, Brettin, Thomas S, Brinkac, Lauren M, Bruce, David, Creasy, Todd, Daugherty, Sean C, Davidsen, Tanja M, DeBoy, Robert T, Detter, J. Chris, Dodson, Robert J, Durkin, A. Scott, Ganapathy, Anuradha, Gwinn-Giglio, Michelle, Han, Cliff S, Khouri, Hoda, Kiss, Hajnalka, Kothari, Sagar P, Madupu, Ramana, Nelson, Karen E, Nelson, William C, Paulsen, Ian, Penn, Kevin, Ren, Qinghu, Rosovitz, M.J, Selengut, Jeremy D, Shrivastava, Susmita, Sullivan, Steven A, Tapia, Roxanne, Thompson, L. Sue, Watkins, Kisha L, Yang, Qi, Yu, Chunhui, Zafar, Nikhat, Zhou, Liwei, Kuske, Cheryl R

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Genome Analysis of Multiple Pathogenic Isolates of Streptococcus agalactiae: Implications for the Microbial "Pan-Genome" von Tettelin, Hervé, Masignani, Vega, Cieslewicz, Michael J., Donati, Claudio, Medini, Duccio, Ward, Naomi L., Angiuoli, Samuel V., Crabtree, Jonathan, Jones, Amanda L., Durkin, A. Scott, DeBoy, Robert T., Davidsen, Tanja M., Mora, Marirosa, Scarselli, Maria, Immaculada Margarit y Ros, Peterson, Jeremy D., Hauser, Christopher R., Sundaram, Jaideep P., Nelson, William C., Madupu, Ramana, Brinkac, Lauren M., Dodson, Robert J., Rosovitz, Mary J., Sullivan, Steven A., Daugherty, Sean C., Haft, Daniel H., Selengut, Jeremy, Gwinn, Michelle L., Zhou, Liwei, Zafar, Nikhat, Khouri, Hoda, Radune, Diana, Dimitrov, George, Watkins, Kisha, Kevin J. B. O'Connor, Smith, Shannon, Utterback, Teresa R., White, Owen, Rubens, Craig E., Grandi, Guido, Madoff, Lawrence C., Kasper, Dennis L., Telford, John L., Wessels, Michael R., Rappuoli, Rino, Fraser, Claire M.

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Insights on Evolution of Virulence and Resistance from the Complete Genome Analysis of an Early Methicillin-Resistant Staphylococcus aureus Strain and a Biofilm-Producing Methicill... von GILL, Steven R, FOUTS, Derrick E, DODSON, Robert J, DAUGHERTY, Sean C, MADUPU, Ramana, ANGIUOLI, Samuel V, DURKIN, A. Scott, HAFT, Daniel H, VAMATHEVAN, Jessica, KHOURI, Hoda, UTTERBACK, Terry, LEE, Chris, ARCHER, Gordon L, DIMITROV, George, LINGXIA JIANG, HAIYING QIN, JAN WEIDMAN, TRAN, Kevin, KANG, Kathy, HANCE, Ioana R, NELSON, Karen E, FRASER, Claire M, MONGODIN, Emmanuel F, DEBOY, Robert T, RAVEL, Jacques, PAULSEN, Ian T, KOLONAY, James F, BRINKAC, Lauren, BEANAN, Mauren

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complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000 von Buell, C. Robin, Joardar, Vinita, Lindeberg, Magdalen, Selengut, Jeremy, Paulsen, Ian T, Gwinn, Michelle L, Dodson, Robert J, Deboy, Robert T, Durkin, A. Scott, Kolonay, James F, Madupu, Ramana, Daugherty, Sean, Brinkac, Lauren, Beanan, Maureen J, Haft, Daniel H, Nelson, William C, Davidsen, Tanja, Zafar, Nikhat, Zhou, Liwei, Liu, Jia, Yuan, Qiaoping, Khouri, Hoda, Fedorova, Nadia, Tran, Bao, Russell, Daniel, Berry, Kristi, Utterback, Teresa, Van Aken, Susan E, Feldblyum, Tamara V, D'Ascenzo, Mark, Deng, Wen-Ling, Ramos, Adela R, Alfano, James R, Cartinhour, Samuel, Chatterjee, Arun K, Delaney, Terrence P, Lazarowitz, Sondra G, Martin, Gregory B, Schneider, David J, Tang, Xiaoyan, Bender, Carol L, White, Owen, Fraser, Claire M, Collmer, Alan

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The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough von Heidelberg, John F, Seshadri, Rekha, Haveman, Shelley A, Hemme, Christopher L, Paulsen, Ian T, Kolonay, James F, Eisen, Jonathan A, Ward, Naomi, Methe, Barbara, Brinkac, Lauren M, Daugherty, Sean C, Deboy, Robert T, Dodson, Robert J, Durkin, A Scott, Madupu, Ramana, Nelson, William C, Sullivan, Steven A, Fouts, Derrick, Haft, Daniel H, Selengut, Jeremy, Peterson, Jeremy D, Davidsen, Tanja M, Zafar, Nikhat, Zhou, Liwei, Radune, Diana, Dimitrov, George, Hance, Mark, Tran, Kevin, Khouri, Hoda, Gill, John, Utterback, Terry R, Feldblyum, Tamara V, Wall, Judy D, Voordouw, Gerrit, Fraser, Claire M

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Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis von Fraser, Claire M, Heidelberg, John F, Paulsen, Ian T, Nelson, Karen E, Gaidos, Eric J, Nelson, William C, Read, Timothy D, Eisen, Jonathan A, Seshadri, Rekha, Ward, Naomi, Methe, Barbara, Clayton, Rebecca A, Meyer, Terry, Tsapin, Alexandre, Scott, James, Beanan, Maureen, Brinkac, Lauren, Daugherty, Sean, DeBoy, Robert T, Dodson, Robert J, Durkin, A. Scott, Haft, Daniel H, Kolonay, James F, Madupu, Ramana, Peterson, Jeremy D, Umayam, Lowell A, White, Owen, Wolf, Alex M, Vamathevan, Jessica, Weidman, Janice, Impraim, Marjorie, Lee, Kathy, Berry, Kristy, Lee, Chris, Mueller, Jacob, Khouri, Hoda, Gill, John, Utterback, Terry R, McDonald, Lisa A, Feldblyum, Tamara V, Smith, Hamilton O, Venter, J. Craig, Nealson, Kenneth H

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Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment von Moran, Mary Ann, Buchan, Alison, González, José M, Heidelberg, John F, Whitman, William B, Kiene, Ronald P, Henriksen, James R, King, Gary M, Belas, Robert, Fuqua, Clay, Brinkac, Lauren, Lewis, Matt, Johri, Shivani, Weaver, Bruce, Pai, Grace, Eisen, Jonathan A, Rahe, Elisha, Sheldon, Wade M, Ye, Wenying, Miller, Todd R, Carlton, Jane, Rasko, David A, Paulsen, Ian T, Ren, Qinghu, Daugherty, Sean C, Deboy, Robert T, Dodson, Robert J, Durkin, A. Scott, Madupu, Ramana, Nelson, William C, Sullivan, Steven A, Rosovitz, M. J, Haft, Daniel H, Selengut, Jeremy, Ward, Naomi

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