NGL viewer: web-based molecular graphics for large complexes von Rose, Alexander S, Bradley, Anthony R, Valasatava, Yana, Duarte, Jose M, Prlić, Andreas, Rose, Peter W

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RCSB Protein Data Bank: Architectural Advances Towards Integrated Searching and Efficient Access to Macromolecular Structure Data from the PDB Archive von Rose, Yana, Duarte, Jose M., Lowe, Robert, Segura, Joan, Bi, Chunxiao, Bhikadiya, Charmi, Chen, Li, Rose, Alexander S., Bittrich, Sebastian, Burley, Stephen K., Westbrook, John D.

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RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine... von Burley, Stephen K, Bhikadiya, Charmi, Bi, Chunxiao, Bittrich, Sebastian, Chen, Li, Crichlow, Gregg V, Christie, Cole H, Dalenberg, Kenneth, Di Costanzo, Luigi, Duarte, Jose M, Dutta, Shuchismita, Feng, Zukang, Ganesan, Sai, Goodsell, David S, Ghosh, Sutapa, Green, Rachel Kramer, Guranović, Vladimir, Guzenko, Dmytro, Hudson, Brian P, Lawson, Catherine L, Liang, Yuhe, Lowe, Robert, Namkoong, Harry, Peisach, Ezra, Persikova, Irina, Randle, Chris, Rose, Alexander, Rose, Yana, Sali, Andrej, Segura, Joan, Sekharan, Monica, Shao, Chenghua, Tao, Yi-Ping, Voigt, Maria, Westbrook, John D, Young, Jasmine Y, Zardecki, Christine, Zhuravleva, Marina

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RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/mac... von Burley, Stephen K, Bhikadiya, Charmi, Bi, Chunxiao, Bittrich, Sebastian, Chao, Henry, Chen, Li, Craig, Paul A, Crichlow, Gregg V, Dalenberg, Kenneth, Duarte, Jose M, Dutta, Shuchismita, Fayazi, Maryam, Feng, Zukang, Flatt, Justin W, Ganesan, Sai, Ghosh, Sutapa, Goodsell, David S, Green, Rachel Kramer, Guranovic, Vladimir, Henry, Jeremy, Hudson, Brian P, Khokhriakov, Igor, Lawson, Catherine L, Liang, Yuhe, Lowe, Robert, Peisach, Ezra, Persikova, Irina, Piehl, Dennis W, Rose, Yana, Sali, Andrej, Segura, Joan, Sekharan, Monica, Shao, Chenghua, Vallat, Brinda, Voigt, Maria, Webb, Ben, Westbrook, John D, Whetstone, Shamara, Young, Jasmine Y, Zalevsky, Arthur, Zardecki, Christine

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RCSB Protein Data Bank: Enabling biomedical research and drug discovery von Goodsell, David S., Zardecki, Christine, Di Costanzo, Luigi, Duarte, Jose M., Hudson, Brian P., Persikova, Irina, Segura, Joan, Shao, Chenghua, Voigt, Maria, Westbrook, John D., Young, Jasmine Y., Burley, Stephen K.

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RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy von Burley, Stephen K, Berman, Helen M, Bhikadiya, Charmi, Bi, Chunxiao, Chen, Li, Di Costanzo, Luigi, Christie, Cole, Dalenberg, Ken, Duarte, Jose M, Dutta, Shuchismita, Feng, Zukang, Ghosh, Sutapa, Goodsell, David S, Green, Rachel K, Guranović, Vladimir, Guzenko, Dmytro, Hudson, Brian P, Kalro, Tara, Liang, Yuhe, Lowe, Robert, Namkoong, Harry, Peisach, Ezra, Periskova, Irina, Prlić, Andreas, Randle, Chris, Rose, Alexander, Rose, Peter, Sala, Raul, Sekharan, Monica, Shao, Chenghua, Tan, Lihua, Tao, Yi-Ping, Valasatava, Yana, Voigt, Maria, Westbrook, John, Woo, Jesse, Yang, Huanwang, Young, Jasmine, Zhuravleva, Marina, Zardecki, Christine

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Automated evaluation of quaternary structures from protein crystals von Bliven, Spencer, Lafita, Aleix, Parker, Althea, Capitani, Guido, Duarte, Jose M

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Real time structural search of the Protein Data Bank von Guzenko, Dmytro, Burley, Stephen K, Duarte, Jose M

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Assessment of protein assembly prediction in CASP13 von Guzenko, Dmytro, Lafita, Aleix, Monastyrskyy, Bohdan, Kryshtafovych, Andriy, Duarte, Jose M.

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Assessment of protein assembly prediction in CASP12 von Lafita, Aleix, Bliven, Spencer, Kryshtafovych, Andriy, Bertoni, Martino, Monastyrskyy, Bohdan, Duarte, Jose M., Schwede, Torsten, Capitani, Guido

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Protein interface classification by evolutionary analysis von Duarte, Jose M, Srebniak, Adam, Schärer, Martin A, Capitani, Guido

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MMTF-An efficient file format for the transmission, visualization, and analysis of macromolecular structures von Bradley, Anthony R, Rose, Alexander S, Pavelka, Antonín, Valasatava, Yana, Duarte, Jose M, Prlić, Andreas, Rose, Peter W

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Bacterial Microcolonies in Gel Beads for High-Throughput Screening of Libraries in Synthetic Biology von Duarte, José M, Barbier, Içvara, Schaerli, Yolanda

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Towards an efficient compression of 3D coordinates of macromolecular structures von Valasatava, Yana, Bradley, Anthony R, Rose, Alexander S, Duarte, Jose M, Prlić, Andreas, Rose, Peter W

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BioJava 5: A community driven open-source bioinformatics library von Lafita, Aleix, Bliven, Spencer, Prlić, Andreas, Guzenko, Dmytro, Rose, Peter W, Bradley, Anthony, Pavan, Paolo, Myers-Turnbull, Douglas, Valasatava, Yana, Heuer, Michael, Larson, Matt, Burley, Stephen K, Duarte, Jose M

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Small angle X‐ray scattering‐assisted protein structure prediction in CASP13 and emergence of solution structure differences von Hura, Greg L., Hodge, Curtis D., Rosenberg, Daniel, Guzenko, Dmytro, Duarte, Jose M., Monastyrskyy, Bohdan, Grudinin, Sergei, Kryshtafovych, Andriy, Tainer, John A., Fidelis, Krzysztof, Tsutakawa, Susan E.

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Protein Data Bank: A Comprehensive Review of 3D Structure Holdings and Worldwide Utilization by Researchers, Educators, and Students von Burley, Stephen K., Berman, Helen M., Duarte, Jose M., Feng, Zukang, Flatt, Justin W., Hudson, Brian P., Lowe, Robert, Peisach, Ezra, Piehl, Dennis W., Rose, Yana, Sali, Andrej, Sekharan, Monica, Shao, Chenghua, Vallat, Brinda, Voigt, Maria, Westbrook, John D., Young, Jasmine Y., Zardecki, Christine

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Updated resources for exploring experimentally-determined PDB structures and Computed Structure Models at the RCSB Protein Data Bank von Burley, Stephen K, Bhatt, Rusham, Bhikadiya, Charmi, Bi, Chunxiao, Biester, Alison, Biswas, Pratyoy, Bittrich, Sebastian, Blaumann, Santiago, Brown, Ronald, Chao, Henry, Chithari, Vivek Reddy, Craig, Paul A, Crichlow, Gregg V, Duarte, Jose M, Dutta, Shuchismita, Feng, Zukang, Flatt, Justin W, Ghosh, Sutapa, Goodsell, David S, Green, Rachel Kramer, Guranovic, Vladimir, Henry, Jeremy, Hudson, Brian P, Joy, Michael, Kaelber, Jason T, Khokhriakov, Igor, Lai, Jhih-Siang, Lawson, Catherine L, Liang, Yuhe, Myers-Turnbull, Douglas, Peisach, Ezra, Persikova, Irina, Piehl, Dennis W, Pingale, Aditya, Rose, Yana, Sagendorf, Jared, Sali, Andrej, Segura, Joan, Sekharan, Monica, Shao, Chenghua, Smith, James, Trumbull, Michael, Vallat, Brinda, Voigt, Maria, Webb, Ben, Whetstone, Shamara, Wu-Wu, Amy, Xing, Tongji, Young, Jasmine Y, Zalevsky, Arthur, Zardecki, Christine

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HDAC3 Mediates the Inflammatory Response and LPS Tolerance in Human Monocytes and Macrophages von Ghiboub, Mohammed, Zhao, Jing, Li Yim, Andrew Y F, Schilderink, Ronald, Verseijden, Caroline, van Hamersveld, Patricia H P, Duarte, Jose M, Hakvoort, Theodorus B M, Admiraal, Iris, Harker, Nicola R, Tough, David F, Henneman, Peter, de Winther, Menno P J, de Jonge, Wouter J

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Investigation of protein quaternary structure via stoichiometry and symmetry information von Korkmaz, Selcuk, Duarte, Jose M, Prlić, Andreas, Goksuluk, Dincer, Zararsiz, Gokmen, Saracbasi, Osman, Burley, Stephen K, Rose, Peter W

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