Sequence-dependent thermodynamics of a coarse-grained DNA model von Šulc, Petr, Romano, Flavio, Ouldridge, Thomas E, Rovigatti, Lorenzo, Doye, Jonathan P K, Louis, Ard A

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Note: Heterogeneous ice nucleation on silver-iodide-like surfaces von Fraux, Guillaume, Doye, Jonathan P K

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Coarse-graining DNA for simulations of DNA nanotechnology von Doye, Jonathan P. K, Ouldridge, Thomas E, Louis, Ard A, Romano, Flavio, Šulc, Petr, Matek, Christian, Snodin, Benedict E. K, Rovigatti, Lorenzo, Schreck, John S, Harrison, Ryan M, Smith, William P. J

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Force-Induced Rupture of a DNA Duplex: From Fundamentals to Force Sensors von Mosayebi, Majid, Louis, Ard A, Doye, Jonathan P. K, Ouldridge, Thomas E

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How to design an icosahedral quasicrystal through directional bonding von Noya, Eva G., Wong, Chak Kui, Llombart, Pablo, Doye, Jonathan P. K.

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Symmetry and simplicity spontaneously emerge from the algorithmic nature of evolution von Johnston, Iain G, Dingle, Kamaludin, Greenbury, Sam F, Camargo, Chico Q, Doye, Jonathan P K, Ahnert, Sebastian E, Louis, Ard A

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On the biophysics and kinetics of toehold-mediated DNA strand displacement von Srinivas, Niranjan, Ouldridge, Thomas E, Sulc, Petr, Schaeffer, Joseph M, Yurke, Bernard, Louis, Ard A, Doye, Jonathan P K, Winfree, Erik

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Programming patchy particles to form complex periodic structures von Tracey, Daniel F., Noya, Eva G., Doye, Jonathan P. K.

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Structural, mechanical, and thermodynamic properties of a coarse-grained DNA model von Ouldridge, Thomas E., Louis, Ard A., Doye, Jonathan P. K.

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Effects of surface interactions on heterogeneous ice nucleation for a monatomic water model von Reinhardt, Aleks, Doye, Jonathan P K

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Programming patchy particles to form three-dimensional dodecagonal quasicrystals von Tracey, Daniel F., Noya, Eva G., Doye, Jonathan P. K.

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Introducing improved structural properties and salt dependence into a coarse-grained model of DNA von Snodin, Benedict E K, Randisi, Ferdinando, Mosayebi, Majid, Šulc, Petr, Schreck, John S, Romano, Flavio, Ouldridge, Thomas E, Tsukanov, Roman, Nir, Eyal, Louis, Ard A, Doye, Jonathan P K

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Designer protein assemblies with tunable phase diagrams in living cells von Heidenreich, Meta, Georgeson, Joseph M., Locatelli, Emanuele, Rovigatti, Lorenzo, Nandi, Saroj Kumar, Steinberg, Avital, Nadav, Yotam, Shimoni, Eyal, Safran, Samuel A., Doye, Jonathan P. K., Levy, Emmanuel D.

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Rolling circle amplification shows a sinusoidal template length-dependent amplification bias von Joffroy, Bastian, Uca, Yavuz O, Prešern, Domen, Doye, Jonathan P. K, Schmidt, Thorsten L

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A nucleotide-level coarse-grained model of RNA von Šulc, Petr, Romano, Flavio, Ouldridge, Thomas E, Doye, Jonathan P K, Louis, Ard A

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Fast Titanium‐Catalyzed Hydroaminomethylation of Alkenes and the Formal Conversion of Methylamine von Bielefeld, Jens, Doye, Sven

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Substrate conformational dynamics facilitate structure-specific recognition of gapped DNA by DNA polymerase von Craggs, Timothy D, Sustarsic, Marko, Plochowietz, Anne, Mosayebi, Majid, Kaju, Hendrik, Cuthbert, Andrew, Hohlbein, Johannes, Domicevica, Laura, Biggin, Philip C, Doye, Jonathan P K, Kapanidis, Achillefs N

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Free energy landscapes for homogeneous nucleation of ice for a monatomic water model von Reinhardt, Aleks, Doye, Jonathan P. K.

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DNA hybridization kinetics: zippering, internal displacement and sequence dependence von Ouldridge, Thomas E, Sulc, Petr, Romano, Flavio, Doye, Jonathan P K, Louis, Ard A

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Local order parameters for use in driving homogeneous ice nucleation with all-atom models of water von Reinhardt, Aleks, Doye, Jonathan P K, Noya, Eva G, Vega, Carlos

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