Crystal structure, conformational fixation and entry-related interactions of mature ligand-free HIV-1 Env von Do Kwon, Young, Pancera, Marie, Acharya, Priyamvada, Georgiev, Ivelin S, Crooks, Emma T, Gorman, Jason, Joyce, M Gordon, Guttman, Miklos, Ma, Xiaochu, Narpala, Sandeep, Soto, Cinque, Terry, Daniel S, Yang, Yongping, Zhou, Tongqing, Ahlsen, Goran, Bailer, Robert T, Chambers, Michael, Chuang, Gwo-Yu, Doria-Rose, Nicole A, Druz, Aliaksandr, Hallen, Mark A, Harned, Adam, Kirys, Tatsiana, Louder, Mark K, O'Dell, Sijy, Ofek, Gilad, Osawa, Keiko, Prabhakaran, Madhu, Sastry, Mallika, Stewart-Jones, Guillaume B E, Stuckey, Jonathan, Thomas, Paul V, Tittley, Tishina, Williams, Constance, Zhang, Baoshan, Zhao, Hong, Zhou, Zhou, Donald, Bruce R, Lee, Lawrence K, Zolla-Pazner, Susan, Baxa, Ulrich, Schön, Arne, Freire, Ernesto, Shapiro, Lawrence, Lee, Kelly K, Arthos, James, Munro, James B, Blanchard, Scott C, Mothes, Walther, Binley, James M, McDermott, Adrian B, Mascola, John R, Kwong, Peter D

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Chiral evasion and stereospecific antifolate resistance in Staphylococcus aureus von Wang, Siyu, Reeve, Stephanie M, Holt, Graham T, Ojewole, Adegoke A, Frenkel, Marcel S, Gainza, Pablo, Keshipeddy, Santosh, Fowler, Vance G, Wright, Dennis L, Donald, Bruce R

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Protein design using continuous rotamers von Gainza, Pablo, Roberts, Kyle E, Donald, Bruce R

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Computational Structure-Based Redesign of Enzyme Activity von Chen, Cheng-Yu, Georgiev, Ivelin, Anderson, Amy C., Donald, Bruce R., Richardson, Jane S.

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Computational design of a PDZ domain peptide inhibitor that rescues CFTR activity von Roberts, Kyle E, Cushing, Patrick R, Boisguerin, Prisca, Madden, Dean R, Donald, Bruce R

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Novel, provable algorithms for efficient ensemble-based computational protein design and their application to the redesign of the c-Raf-RBD:KRas protein-protein interface von Lowegard, Anna U, Frenkel, Marcel S, Holt, Graham T, Jou, Jonathan D, Ojewole, Adegoke A, Donald, Bruce R

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Intracellular Neural Recording with Pure Carbon Nanotube Probes von Yoon, Inho, Hamaguchi, Kosuke, Borzenets, Ivan V, Finkelstein, Gleb, Mooney, Richard, Donald, Bruce R

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Planning and control for microassembly of structures composed of stress-engineered MEMS microrobots von Donald, Bruce R, Levey, Christopher G, Paprotny, Igor, Rus, Daniela

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Predicting resistance mutations using protein design algorithms von Frey, Kathleen M., Georgiev, Ivelin, Donald, Bruce R., Anderson, Amy C., Stroud, Robert M.

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Protein design algorithms predict viable resistance to an experimental antifolate von Reeve, Stephanie M., Gainza, Pablo, Frey, Kathleen M., Georgiev, Ivelin, Donald, Bruce R., Anderson, Amy C.

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Protocol for predicting drug-resistant protein mutations to an ERK2 inhibitor using RESISTOR von Guerin, Nathan, Kaserer, Teresa, Donald, Bruce R.

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Discovery, characterization, and redesign of potent antimicrobial thanatin orthologs from Chinavia ubica and Murgantia histrionica targeting E. coli LptA von Huynh, Kelly, Kibrom, Amanuel, Donald, Bruce R., Zhou, Pei

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Improved HIV-1 neutralization breadth and potency of V2-apex antibodies by in silico design von Holt, Graham T., Gorman, Jason, Wang, Siyu, Lowegard, Anna U., Zhang, Baoshan, Liu, Tracy, Lin, Bob C., Louder, Mark K., Frenkel, Marcel S., McKee, Krisha, O’Dell, Sijy, Rawi, Reda, Shen, Chen-Hsiang, Doria-Rose, Nicole A., Kwong, Peter D., Donald, Bruce R.

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Fast search algorithms for computational protein design von Traoré, Seydou, Roberts, Kyle E., Allouche, David, Donald, Bruce R., André, Isabelle, Schiex, Thomas, Barbe, Sophie

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Structure of an HIV-1–neutralizing antibody target, the lipid-bound gp41 envelope membrane proximal region trimer von Reardon, Patrick N., Sage, Harvey, Dennison, S. Moses, Martin, Jeffrey W., Donald, Bruce R., Alam, S. Munir, Haynes, Barton F., Spicer, Leonard D.

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Auditory synapses to song premotor neurons are gated off during vocalization in zebra finches von Hamaguchi, Kosuke, Tschida, Katherine A, Yoon, Inho, Donald, Bruce R, Mooney, Richard

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Disruptor: Computational identification of oncogenic mutants disrupting protein-protein and protein-DNA interactions von Kugler, Valentina, Lieb, Andreas, Guerin, Nathan, Donald, Bruce R., Stefan, Eduard, Kaserer, Teresa

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A critical analysis of computational protein design with sparse residue interaction graphs von Jain, Swati, Jou, Jonathan D, Georgiev, Ivelin S, Donald, Bruce R

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RESISTOR: A New OSPREY Module to Predict Resistance Mutations von Guerin, Nathan, Kaserer, Teresa, Donald, Bruce R

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Algorithms for protein design von Gainza, Pablo, Nisonoff, Hunter M, Donald, Bruce R

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