Human subtilase SKI-1/S1P is a master regulator of the HCV Lifecycle and a potential host cell target for developing indirect-acting antiviral agents von Olmstead, Andrea D, Knecht, Wolfgang, Lazarov, Ina, Dixit, Surjit B, Jean, François

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Spectroscopic and Molecular Dynamics Evidence for a Sequential Mechanism for the A-to-B Transition in DNA von Knee, Kelly M., Dixit, Surjit B., Aitken, Colin Echeverría, Ponomarev, Sergei, Beveridge, D.L., Mukerji, Ishita

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Improving biophysical properties of a bispecific antibody scaffold to aid developability: quality by molecular design von Von Kreudenstein, Thomas Spreter, Escobar-Carbrera, Eric, Lario, Paula I, D'Angelo, Igor, Brault, Karine, Kelly, John, Durocher, Yves, Baardsnes, Jason, Woods, R Jeremy, Xie, Michael Hongwei, Girod, Pierre-Alain, Suits, Michael D L, Boulanger, Martin J, Poon, David K Y, Ng, Gordon Y K, Dixit, Surjit B

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Protein engineering and the use of molecular modeling and simulation: The case of heterodimeric Fc engineering von Spreter Von Kreudenstein, Thomas, Lario, Paula I., Dixit, Surjit B.

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Molecular Dynamics Simulations of the 136 Unique Tetranucleotide Sequences of DNA Oligonucleotides. II: Sequence Context Effects on the Dynamical Structures of the 10 Unique Dinucl... von Dixit, Surjit B., Beveridge, David L., Case, David A., Cheatham, Thomas E., Giudice, Emmanuel, Lankas, Filip, Lavery, Richard, Maddocks, John H., Osman, Roman, Sklenar, Heinz, Thayer, Kelly M., Varnai, Péter

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Molecular Dynamics Simulations of the 136 Unique Tetranucleotide Sequences of DNA Oligonucleotides. I. Research Design and Results on d(C pG) Steps von Beveridge, David L., Barreiro, Gabriela, Suzie Byun, K., Case, David A., Cheatham, Thomas E., Dixit, Surjit B., Giudice, Emmanuel, Lankas, Filip, Lavery, Richard, Maddocks, John H., Osman, Roman, Seibert, Eleanore, Sklenar, Heinz, Stoll, Gautier, Thayer, Kelly M., Varnai, Péter, Young, Matthew A.

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Studies of base pair sequence effects on DNA solvation based on all-atom molecular dynamics simulations von Dixit, Surjit B, Mezei, Mihaly, Beveridge, David L

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LC-MS characterization and purity assessment of a prototype bispecific antibody von Woods, R. Jeremy, Xie, Michael Hongwei, Von Kreudenstein, Thomas Spreter, Ng, Gordon Y., Dixit, Surjit B.

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Can Absolute Free Energies of Association Be Estimated from Molecular Mechanical Simulations? The Biotin−Streptavidin System Revisited von Dixit, Surjit B, Chipot, Christophe

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Prokaryotic Gene Finding Based on Physicochemical Characteristics of Codons Calculated from Molecular Dynamics Simulations von Singhal, Poonam, Jayaram, B., Dixit, Surjit B., Beveridge, David L.

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Can free energy calculations be fast and accurate at the same time? Binding of low-affinity, non-peptide inhibitors to the SH2 domain of the src protein von Chipot, Christophe, Rozanska, Xavier, Dixit, Surjit B

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Root Mean Square Deviation Probability Analysis of Molecular Dynamics Trajectories on DNA von Dixit, Surjit B, Ponomarev, Sergei Y, Beveridge, David L

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Structural bioinformatics of DNA: a web-based tool for the analysis of molecular dynamics results and structure prediction von Dixit, Surjit B., Beveridge, David L.

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Molecular dynamics simulations of DNA curvature and flexibility: Helix phasing and premelting von Beveridge, D. L., Dixit, Surjit B., Barreiro, Gabriela, Thayer, Kelly M.

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Free Energy Analysis of Protein–DNA Binding: The EcoRI Endonuclease–DNA Complex von Jayaram, B, McConnell, K.J, Dixit, Surjit B, Beveridge, D.L

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Induced Fit and the Entropy of Structural Adaptation in the Complexation of CAP and λ-Repressor with Cognate DNA Sequences von Dixit, Surjit B., Andrews, David Q., Beveridge, D.L.

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Axis Curvature and Ligand Induced Bending in the CAP-DNA Oligomers von Dixit, Surjit B., Beveridge, David L.

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Structure and axis curvature in two dA6·dT6 DNA oligonucleotides: Comparison of molecular dynamics simulations with results from crystallography and NMR spectroscopy von Dixit, Surjit B., Pitici, Felicia, Beveridge, D. L.

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CTL Recognition of a Protective Immunodominant Influenza A Virus Nucleoprotein Epitope Utilizes a Highly Restricted Vβ but Diverse Vα Repertoire: Functional and Structural Implicat... von Zhong, Weimin, Dixit, Surjit B., Mallis, Robert J., Arthanari, Haribabu, Lugovskoy, Alexey A., Beveridge, David L., Wagner, Gerhard, Reinherz, Ellis L.

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SYSTEMS AND METHODS FOR SAMPLING AND ANALYSIS OF POLYMER CONFORMATIONAL DYNAMICS von DIXIT, SURJIT B

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