Exercise prevents weight gain and alters the gut microbiota in a mouse model of high fat diet-induced obesity von Evans, Christian C, LePard, Kathy J, Kwak, Jeff W, Stancukas, Mary C, Laskowski, Samantha, Dougherty, Joseph, Moulton, Laura, Glawe, Adam, Wang, Yunwei, Leone, Vanessa, Antonopoulos, Dionysios A, Smith, Dan, Chang, Eugene B, Ciancio, Mae J

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Natural polyreactive IgA antibodies coat the intestinal microbiota von Bunker, Jeffrey J., Erickson, Steven A., Flynn, Theodore M., Henry, Carole, Koval, Jason C., Meisel, Marlies, Jabri, Bana, Antonopoulos, Dionysios A., Wilson, Patrick C., Bendelac, Albert

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Dietary-fat-induced taurocholic acid promotes pathobiont expansion and colitis in Il10−/− mice von Devkota, Suzanne, Wang, Yunwei, Musch, Mark W., Leone, Vanessa, Fehlner-Peach, Hannah, Nadimpalli, Anuradha, Antonopoulos, Dionysios A., Jabri, Bana, Chang, Eugene B.

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Innate and Adaptive Humoral Responses Coat Distinct Commensal Bacteria with Immunoglobulin A von Bunker, Jeffrey J., Flynn, Theodore M., Koval, Jason C., Shaw, Dustin G., Meisel, Marlies, McDonald, Benjamin D., Ishizuka, Isabel E., Dent, Alexander L., Wilson, Patrick C., Jabri, Bana, Antonopoulos, Dionysios A., Bendelac, Albert

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Commensal bacteria protect against food allergen sensitization von Stefka, Andrew T., Feehley, Taylor, Tripathi, Prabhanshu, Qiu, Ju, McCoy, Kathy, Mazmanian, Sarkis K., Tjota, Melissa Y., Seo, Goo-Young, Cao, Severine, Theriault, Betty R., Antonopoulos, Dionysios A., Zhou, Liang, Chang, Eugene B., Fu, Yang-Xin, Nagler, Cathryn R.

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Spatial scale drives patterns in soil bacterial diversity von O'Brien, Sarah L., Gibbons, Sean M., Owens, Sarah M., Hampton-Marcell, Jarrad, Johnston, Eric R., Jastrow, Julie D., Gilbert, Jack A., Meyer, Folker, Antonopoulos, Dionysios A.

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Regional mucosa-associated microbiota determine physiological expression of TLR2 and TLR4 in murine colon von Wang, Yunwei, Devkota, Suzanne, Musch, Mark W, Jabri, Bana, Nagler, Cathryn, Antonopoulos, Dionysios A, Chervonsky, Alexander, Chang, Eugene B

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Healthy infants harbor intestinal bacteria that protect against food allergy von Feehley, Taylor, Plunkett, Catherine H., Bao, Riyue, Choi Hong, Sung Min, Culleen, Elliot, Belda-Ferre, Pedro, Campbell, Evelyn, Aitoro, Rosita, Nocerino, Rita, Paparo, Lorella, Andrade, Jorge, Antonopoulos, Dionysios A., Berni Canani, Roberto, Nagler, Cathryn R.

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Decreased Diversity of the Fecal Microbiome in Recurrent Clostridium difficile—Associated Diarrhea von Chang, Ju Young, Antonopoulos, Dionysios A., Kalra, Apoorv, Tonelli, Adriano, Khalife, Walid T., Schmidt, Thomas M., Young, Vincent B.

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Genetic and Metabolic Signals during Acute Enteric Bacterial Infection Alter the Microbiota and Drive Progression to Chronic Inflammatory Disease von Kamdar, Karishma, Khakpour, Samira, Chen, Jingyu, Leone, Vanessa, Brulc, Jennifer, Mangatu, Thomas, Antonopoulos, Dionysios A., Chang, Eugene B., Kahn, Stacy A., Kirschner, Barbara S., Young, Glenn, DePaolo, R. William

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Reproducible Community Dynamics of the Gastrointestinal Microbiota following Antibiotic Perturbation von ANTONOPOULOS, Dionysios A, HUSE, Susan M, MORRISON, Hilary G, SCHMIDT, Thomas M, SOGIN, Mitchell L, YOUNG, Vincent B

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Impact of Organic Carbon Electron Donors on Microbial Community Development under Iron- and Sulfate-Reducing Conditions von Kwon, Man Jae, O'Loughlin, Edward J, Boyanov, Maxim I, Brulc, Jennifer M, Johnston, Eric R, Kemner, Kenneth M, Antonopoulos, Dionysios A

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Diversity of bacteria at healthy human conjunctiva von Dong, Qunfeng, Brulc, Jennifer M, Iovieno, Alfonso, Bates, Brandon, Garoutte, Aaron, Miller, Darlene, Revanna, Kashi V, Gao, Xiang, Antonopoulos, Dionysios A, Slepak, Vladlen Z, Shestopalov, Valery I

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Polymorphic Immune Mechanisms Regulate Commensal Repertoire von Khan, Aly A., Yurkovetskiy, Leonid, O’Grady, Kelly, Pickard, Joseph M., de Pooter, Renée, Antonopoulos, Dionysios A., Golovkina, Tatyana, Chervonsky, Alexander

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Biogeochemical dynamics and microbial community development under sulfate- and iron-reducing conditions based on electron shuttle amendment von Flynn, Theodore M, Antonopoulos, Dionysios A, Skinner, Kelly A, Brulc, Jennifer M, Johnston, Eric, Boyanov, Maxim I, Kwon, Man Jae, Kemner, Kenneth M, O'Loughlin, Edward J

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Diversity and Strain Specificity of Plant Cell Wall Degrading Enzymes Revealed by the Draft Genome of Ruminococcus flavefaciens FD-1 von Miller, Margret E. Berg, Antonopoulos, Dionysios A, Rincon, Marco T, Band, Mark, Bari, Albert, Akraiko, Tatsiana, Hernandez, Alvaro, Thimmapuram, Jyothi, Henrissat, Bernard, Coutinho, Pedro M, Borovok, Ilya, Jindou, Sadanari, Lamed, Raphael, Flint, Harry J, Bayer, Edward A, White, Bryan A

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Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases von Brulc, Jennifer M, Antonopoulos, Dionysios A, Berg Miller, Margret E, Wilson, Melissa K, Yannarell, Anthony C, Dinsdale, Elizabeth A, Edwards, Robert E, Frank, Edward D, Emerson, Joanne B, Wacklin, Pirjo, Coutinho, Pedro M, Henrissat, Bernard, Nelson, Karen E, White, Bryan A

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PATRIC as a unique resource for studying antimicrobial resistance von Antonopoulos, Dionysios A, Assaf, Rida, Aziz, Ramy Karam, Brettin, Thomas, Bun, Christopher, Conrad, Neal, Davis, James J, Dietrich, Emily M, Disz, Terry, Gerdes, Svetlana, Kenyon, Ronald W, Machi, Dustin, Mao, Chunhong, Murphy-Olson, Daniel E, Nordberg, Eric K, Olsen, Gary J, Olson, Robert, Overbeek, Ross, Parrello, Bruce, Pusch, Gordon D, Santerre, John, Shukla, Maulik, Stevens, Rick L, VanOeffelen, Margo, Vonstein, Veronika, Warren, Andrew S, Wattam, Alice R, Xia, Fangfang, Yoo, Hyunseung

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Metagenomic profiling of a microbial assemblage associated with the California mussel: a node in networks of carbon and nitrogen cycling von Pfister, Catherine A, Meyer, Folker, Antonopoulos, Dionysios A

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16S rRNA gene-based analysis of fecal microbiota from preterm infants with and without necrotizing enterocolitis von Wang, Yunwei, Hoenig, Jeanette D, Malin, Kathryn J, Qamar, Sanaa, Petrof, Elaine O, Sun, Jun, Antonopoulos, Dionysios A, Chang, Eugene B, Claud, Erika C

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