Deep Mutational Scanning of SARS-CoV-2 Receptor Binding Domain Reveals Constraints on Folding and ACE2 Binding von Starr, Tyler N., Greaney, Allison J., Hilton, Sarah K., Ellis, Daniel, Crawford, Katharine H.D., Dingens, Adam S., Navarro, Mary Jane, Bowen, John E., Tortorici, M. Alejandra, Walls, Alexandra C., King, Neil P., Veesler, David, Bloom, Jesse D.

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Complete map of SARS-CoV-2 RBD mutations that escape the monoclonal antibody LY-CoV555 and its cocktail with LY-CoV016 von Starr, Tyler N., Greaney, Allison J., Dingens, Adam S., Bloom, Jesse D.

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Protocol and Reagents for Pseudotyping Lentiviral Particles with SARS-CoV-2 Spike Protein for Neutralization Assays von Crawford, Katharine H D, Eguia, Rachel, Dingens, Adam S, Loes, Andrea N, Malone, Keara D, Wolf, Caitlin R, Chu, Helen Y, Tortorici, M Alejandra, Veesler, David, Murphy, Michael, Pettie, Deleah, King, Neil P, Balazs, Alejandro B, Bloom, Jesse D

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Dynamics of Neutralizing Antibody Titers in the Months After Severe Acute Respiratory Syndrome Coronavirus 2 Infection von Crawford, Katharine H D, Dingens, Adam S, Eguia, Rachel, Wolf, Caitlin R, Wilcox, Naomi, Logue, Jennifer K, Shuey, Kiel, Casto, Amanda M, Fiala, Brooke, Wrenn, Samuel, Pettie, Deleah, King, Neil P, Greninger, Alexander L, Chu, Helen Y, Bloom, Jesse D

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An Antigenic Atlas of HIV-1 Escape from Broadly Neutralizing Antibodies Distinguishes Functional and Structural Epitopes von Dingens, Adam S., Arenz, Dana, Weight, Haidyn, Overbaugh, Julie, Bloom, Jesse D.

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Experimental Estimation of the Effects of All Amino-Acid Mutations to HIV's Envelope Protein on Viral Replication in Cell Culture von Haddox, Hugh K, Dingens, Adam S, Bloom, Jesse D

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Comprehensive Mapping of HIV-1 Escape from a Broadly Neutralizing Antibody von Dingens, Adam S., Haddox, Hugh K., Overbaugh, Julie, Bloom, Jesse D.

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Restriction of HIV-1 Escape by a Highly Broad and Potent Neutralizing Antibody von Schommers, Philipp, Gruell, Henning, Abernathy, Morgan E., Tran, My-Kim, Dingens, Adam S., Gristick, Harry B., Barnes, Christopher O., Schoofs, Till, Schlotz, Maike, Vanshylla, Kanika, Kreer, Christoph, Weiland, Daniela, Holtick, Udo, Scheid, Christof, Valter, Markus M., van Gils, Marit J., Sanders, Rogier W., Vehreschild, Jörg J., Cornely, Oliver A., Lehmann, Clara, Fätkenheuer, Gerd, Seaman, Michael S., Bloom, Jesse D., Bjorkman, Pamela J., Klein, Florian

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Mapping mutational effects along the evolutionary landscape of HIV envelope von Haddox, Hugh K, Dingens, Adam S, Hilton, Sarah K, Overbaugh, Julie, Bloom, Jesse D

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Serological identification of SARS-CoV-2 infections among children visiting a hospital during the initial Seattle outbreak von Dingens, Adam S., Crawford, Katharine H. D., Adler, Amanda, Steele, Sarah L., Lacombe, Kirsten, Eguia, Rachel, Amanat, Fatima, Walls, Alexandra C., Wolf, Caitlin R., Murphy, Michael, Pettie, Deleah, Carter, Lauren, Qin, Xuan, King, Neil P., Veesler, David, Krammer, Florian, Dickerson, Jane A., Chu, Helen Y., Englund, Janet A., Bloom, Jesse D.

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Complete functional mapping of infection- and vaccine-elicited antibodies against the fusion peptide of HIV von Dingens, Adam S, Acharya, Priyamvada, Haddox, Hugh K, Rawi, Reda, Xu, Kai, Chuang, Gwo-Yu, Wei, Hui, Zhang, Baoshan, Mascola, John R, Carragher, Bridget, Potter, Clinton S, Overbaugh, Julie, Kwong, Peter D, Bloom, Jesse D

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Prediction of VRC01 neutralization sensitivity by HIV-1 gp160 sequence features von Magaret, Craig A, Benkeser, David C, Williamson, Brian D, Borate, Bhavesh R, Carpp, Lindsay N, Georgiev, Ivelin S, Setliff, Ian, Dingens, Adam S, Simon, Noah, Carone, Marco, Simpkins, Christopher, Montefiori, David, Alter, Galit, Yu, Wen-Han, Juraska, Michal, Edlefsen, Paul T, Karuna, Shelly, Mgodi, Nyaradzo M, Edugupanti, Srilatha, Gilbert, Peter B

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Cooperation between distinct viral variants promotes growth of H3N2 influenza in cell culture von Xue, Katherine S, Hooper, Kathryn A, Ollodart, Anja R, Dingens, Adam S, Bloom, Jesse D

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Massively Parallel Profiling of HIV-1 Resistance to the Fusion Inhibitor Enfuvirtide von Dingens, Adam S, Arenz, Dana, Overbaugh, Julie, Bloom, Jesse D

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High-resolution mapping of the neutralizing and binding specificities of polyclonal sera post-HIV Env trimer vaccination von Dingens, Adam S, Pratap, Payal, Malone, Keara, Hilton, Sarah K, Ketas, Thomas, Cottrell, Christopher A, Overbaugh, Julie, Moore, John P, Klasse, P J, Ward, Andrew B, Bloom, Jesse D

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APOBEC3C Tandem Domain Proteins Create Super Restriction Factors against HIV-1 von McDonnell, Mollie M, Crawford, Kate H D, Dingens, Adam S, Bloom, Jesse D, Emerman, Michael

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Prospective mapping of viral mutations that escape antibodies used to treat COVID-19 von Starr, Tyler N, Greaney, Allison J, Addetia, Amin, Hannon, William W, Choudhary, Manish C, Dingens, Adam S, Li, Jonathan Z, Bloom, Jesse D

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Superinfection Drives HIV Neutralizing Antibody Responses from Several B Cell Lineages that Contribute to a Polyclonal Repertoire von Williams, Katherine L., Wang, Bingjie, Arenz, Dana, Williams, James A., Dingens, Adam S., Cortez, Valerie, Simonich, Cassandra A., Rainwater, Stephanie, Lehman, Dara A., Lee, Kelly K., Overbaugh, Julie

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Complete Mapping of Mutations to the SARS-CoV-2 Spike Receptor-Binding Domain that Escape Antibody Recognition von Greaney, Allison J., Starr, Tyler N., Gilchuk, Pavlo, Zost, Seth J., Binshtein, Elad, Loes, Andrea N., Hilton, Sarah K., Huddleston, John, Eguia, Rachel, Crawford, Katharine H.D., Dingens, Adam S., Nargi, Rachel S., Sutton, Rachel E., Suryadevara, Naveenchandra, Rothlauf, Paul W., Liu, Zhuoming, Whelan, Sean P.J., Carnahan, Robert H., Crowe, James E., Bloom, Jesse D.

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Identification of HIV-1 Envelope Mutations that Enhance Entry Using Macaque CD4 and CCR5 von Roop, Jeremy I, Cassidy, Noah A, Dingens, Adam S, Bloom, Jesse D, Overbaugh, Julie

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