Fast algorithms for large-scale genome alignment and comparison von Delcher, Arthur L., Phillippy, Adam, Carlton, Jane, Salzberg, Steven L.

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Alignment of whole genomes von Delcher, Arthur L., Kasif, Simon, Fleischmann, Robert D., Peterson, Jeremy, White, Owen, Salzberg, Steven L.

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Microbial gene identification using interpolated Markov models von Salzberg, Steven L., Delcher, Arthur L., Kasif, Simon, White, Owen

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Improved microbial gene identification with GLIMMER von Delcher, Arthur L., Harmon, Douglas, Kasif, Simon, White, Owen, Salzberg, Steven L.

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Interpolated Markov Models for Eukaryotic Gene Finding von Salzberg, Steven L., Pertea, Mihaela, Delcher, Arthur L., Gardner, Malcolm J., Tettelin, Hervé

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dog genome: survey sequencing and comparative analysis von Kirkness, E.F, Bafna, V, Halpern, A.L, Levy, S, Remington, K, Rusch, D.B, Delcher, A.L, Pop, M, Wang, W, Fraser, C.M

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A Whole-Genome Assembly of Drosophila von Myers, Eugene W., Sutton, Granger G., Delcher, Art L., Dew, Ian M., Fasulo, Dan P., Flanigan, Michael J., Kravitz, Saul A., Mobarry, Clark M., Knut H. J. Reinert, Remington, Karin A., Anson, Eric L., Bolanos, Randall A., Chou, Hui-Hsien, Jordan, Catherine M., Halpern, Aaron L., Lonardi, Stefano, Beasley, Ellen M., Brandon, Rhonda C., Chen, Lin, Dunn, Patrick J., Lai, Zhongwu, Liang, Yong, Nusskern, Deborah R., Zhan, Ming, Zhang, Qing, Zheng, Xiangqun, Rubin, Gerald M., Adams, Mark D., Venter, J. Craig

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Genome Sequence of the Dioxin-Mineralizing Bacterium Sphingomonas wittichii RW1 von MILLER, Todd R, DELCHER, Arthur L, SALZBERG, Steven L, SAUNDERS, Elizabeth, DETTER, John C, HALDEN, Rolf U

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Best-case results for nearest-neighbor learning von Salzberg, S., Delcher, A.L., Heath, D., Kasif, S.

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An NC algorithm for evaluating monotone planar circuits von DELCHER, A. L, RAO KOSARAJU, S

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Logarithmic-Time Updates and Queries in Probabilistic Networks von Delcher, A. L., Grove, A. J., Kasif, S., Pearl, J.

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Hawkeye and AMOS: visualizing and assessing the quality of genome assemblies von Schatz, Michael C, Phillippy, Adam M, Sommer, Daniel D, Delcher, Arthur L, Puiu, Daniela, Narzisi, Giuseppe, Salzberg, Steven L, Pop, Mihai

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A decision tree system for finding genes in DNA von Salzberg, S, Delcher, A L, Fasman, K H, Henderson, J

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DAGchainer: a tool for mining segmental genome duplications and synteny von Haas, Brian J., Delcher, Arthur L., Wortman, Jennifer R., Salzberg, Steven L.

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Genome Sequence of Trypanosoma cruzi, Etiologic Agent of Chagas Disease von El-Sayed, Najib M, Myler, Peter J, Bartholomeu, Daniella C, Nilsson, Daniel, Aggarwal, Gautam, Tran, Anh-Nhi, Ghedin, Elodie, Worthey, Elizabeth A, Delcher, Arthur L, Blandin, Gae̊lle, Westenberger, Scott J, Caler, Elisabet, Cerqueira, Gustavo C, Branche, Carole, Haas, Brian, Anupama, Atashi, Arner, Erik, Åslund, Lena, Attipoe, Philip, Bontempi, Esteban, Bringaud, Frédéric, Burton, Peter, Cadag, Eithon, Campbell, David A, Carrington, Mark, Crabtree, Jonathan, Darban, Hamid, da Silveira, Jose Franco, de Jong, Pieter, Edwards, Kimberly, Englund, Paul T, Fazelina, Gholam, Feldblyum, Tamara, Ferella, Marcela, Frasch, Alberto Carlos, Gull, Keith, Horn, David, Hou, Lihua, Huang, Yiting, Kindlund, Ellen, Klingbeil, Michele, Kluge, Sindy, Koo, Hean, Lacerda, Daniela, Levin, Mariano J, Lorenzi, Hernan, Louie, Tin, Machado, Carlos Renato, McCulloch, Richard, McKenna, Alan, Mizuno, Yumi, Mottram, Jeremy C, Nelson, Siri, Ochaya, Stephen, Osoegawa, Kazutoyo, Pai, Grace, Parsons, Marilyn, Pentony, Martin, Pettersson, Ulf, Pop, Mihai, Ramirez, Jose Luis, Rinta, Joel, Robertson, Laura, Salzberg, Steven L, Sanchez, Daniel O, Seyler, Amber, Sharma, Reuben, Shetty, Jyoti, Simpson, Anjana J, Sisk, Ellen, Tammi, Martti T, Tarleton, Rick, Teixeira, Santuza, Van Aken, Susan, Vogt, Christy, Ward, Pauline N, Wickstead, Bill, Wortman, Jennifer, White, Owen, Fraser, Claire M, Stuart, Kenneth D, Andersson, Björn

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Versatile and open software for comparing large genomes von Kurtz, Stefan, Phillippy, Adam, Delcher, Arthur L, Smoot, Michael, Shumway, Martin, Antonescu, Corina, Salzberg, Steven L

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Comparative genome assembly von POP, Mihai, PHILLIPPY, Adam, DELCHER, Arthur L, SALZBERG, Steven L

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A Comparison of Whole-Genome Shotgun-Derived Mouse Chromosome 16 and the Human Genome von Mural, Richard J., Adams, Mark D., Smith, Hamilton O., George L. Gabor Miklos, Halpern, Aaron, Li, Peter W., Salzberg, Steven L., Holt, Robert A., Lu, Fu, Gan, Weiniu, Heiman, Thomas J., Milshina, Natalia V., Wang, Aihui, Wang, Jian, Ye, Jane, Yooseph, Shibu, Zhao, Qi, Zheng, Liansheng, Biddick, Kendra, Bolanos, Randall, Delcher, Arthur L., Dew, Ian M., Fasulo, Daniel, Huson, Daniel H., Miller, Jason R., Mobarry, Clark M., Reinert, Knut, Zhang, Qing, Nusskern, Deborah R., Lei, Yiding, Guan, Ping, Ji, Rui-Ru, Wang, Zhen-Yuan, Zhong, Fei, Chiang, Chia-Chien, Yandell, Mark, Wortman, Jennifer R., Amanatides, Peter G., Pratts, Eric C., Johnson, Jeffery E., Dodson, Kristina L., Gropman, Barry, Rusch, Douglas B., Venter, Eli, Wang, Mei, Houck, Jarrett T., Tompkins, Donald E., Haynes, Charles, Chin, Soo H., Allen, David R., Li, Kelvin, Liu, Xiangjun, Levitsky, Alexander A., Majoros, William H., Xia, Ashley C., Newman, Matthew H., Ali, Feroze, Baldwin-Pitts, Danita, Caulk, Parris M., Angela Center, Chen, Yen-Hui, Cheng, Ming-Lai, Coyne, My D., Crowder, Michelle, Danaher, Steven, Davenport, Lionel B., Ferriera, Steven, Fosler, Carl R., Gire, Harold C., Gluecksmann, Andres, Hart, Brit, Haynes, Jason, Johns, David, Kline, Leslie, Ma, Daniel S., MacCawley, Steven, Magoon, Anand, Mann, Felecia, May, David, McIntosh, Tina C., Puri, Vinita N., Qureshi, Hina, Raley, John C., Reardon, Matthew S., Regier, Megan A., Rogers, Yu-Hui C., Romblad, Deanna L., Scott, Richard, Sitter, Cynthia D., Smallwood, Michella, Sprague, Arlan C., Strong, Renee V., Sylvester, Karena, Tint, Tsonis, Christopher, Wang, Gary, Wang, George, Windsor, Sandra M., Wolfe, Keriellen, Chaturvedi, Kabir

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Serendipitous discovery of Wolbachia genomes in multiple Drosophila species von Salzberg, Steven L, Dunning Hotopp, Julie C, Delcher, Arthur L, Pop, Mihai, Smith, Douglas R, Eisen, Michael B, Nelson, William C

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Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies von Haas, Brian J., Delcher, Arthur L., Mount, Stephen M., Wortman, Jennifer R., Smith Jr, Roger K., Hannick, Linda I., Maiti, Rama, Ronning, Catherine M., Rusch, Douglas B., Town, Christopher D., Salzberg, Steven L., White, Owen

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