HAM-ART: An optimised culture-free Hi-C metagenomics pipeline for tracking antimicrobial resistance genes in complex microbial communities von Kalmar, Lajos, Gupta, Srishti, Kean, Iain R L, Ba, Xiaoliang, Hadjirin, Nazreen, Lay, Elizabeth M, de Vries, Stefan P W, Bateman, Michael, Bartlet, Harriet, Hernandez-Garcia, Juan, Tucker, Alexander W, Restif, Olivier, Stevens, Mark P, Wood, James L N, Maskell, Duncan J, Grant, Andrew J, Holmes, Mark A

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Phylogenetic analyses and antimicrobial resistance profiles of Campylobacter spp. from diarrhoeal patients and chickens in Botswana von de Vries, Stefan P W, Vurayai, Moses, Holmes, Mark, Gupta, Srishti, Bateman, Michael, Goldfarb, David, Maskell, Duncan J, Matsheka, Maitshwarelo Ignatius, Grant, Andrew J

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Genome Analysis of Moraxella catarrhalis Strain RH4, a Human Respiratory Tract Pathogen von DE VRIES, Stefan P. W, VAN HIJUM, Sacha A. F. T, SCHUELER, Wolfgang, RIESBECK, Kristian, HAYS, John P, HERMANS, Peter W. M, BOOTSMA, Hester J

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Multicomponent Moraxella catarrhalis outer membrane vesicles induce an inflammatory response and are internalized by human epithelial cells von Schaar, Viveka, de Vries, Stefan P.W, Perez Vidakovics, Maria Laura A, Bootsma, Hester J, Larsson, Lennart, Hermans, Peter W.M, Bjartell, Anders, Mörgelin, Matthias, Riesbeck, Kristian

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Molecular Aspects of Moraxella catarrhalis Pathogenesis von DE VRIES, Stefan P. W, BOOTSMA, Hester J, HAYS, John P, HERMANS, Peter W. M

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From microbial gene essentiality to novel antimicrobial drug targets von Mobegi, Fredrick M, van Hijum, Sacha A F T, Burghout, Peter, Bootsma, Hester J, de Vries, Stefan P W, van der Gaast-de Jongh, Christa E, Simonetti, Elles, Langereis, Jeroen D, Hermans, Peter W M, de Jonge, Marien I, Zomer, Aldert

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Safety and efficacy of a novel inactivated trivalent Salmonella enterica vaccine in chickens von Crouch, Colin F., Nell, Tom, Reijnders, Martine, Donkers, Ton, Pugh, Chris, Patel, Amit, Davis, Phil, van Hulten, Marielle C.W., de Vries, Stefan P.W.

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Comparative analysis and supragenome modeling of twelve Moraxella catarrhalis clinical isolates von Davie, Jeremiah J, Earl, Josh, de Vries, Stefan P W, Ahmed, Azad, Hu, Fen Z, Bootsma, Hester J, Stol, Kim, Hermans, Peter W M, Wadowsky, Robert M, Ehrlich, Garth D, Hays, John P, Campagnari, Anthony A

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Genome‐wide association of functional traits linked with Campylobacter jejuni survival from farm to fork von Yahara, Koji, Méric, Guillaume, Taylor, Aidan J., de Vries, Stefan P. W., Murray, Susan, Pascoe, Ben, Mageiros, Leonardos, Torralbo, Alicia, Vidal, Ana, Ridley, Anne, Komukai, Sho, Wimalarathna, Helen, Cody, Alison J., Colles, Frances M., McCarthy, Noel, Harris, David, Bray, James E., Jolley, Keith A., Maiden, Martin C. J., Bentley, Stephen D., Parkhill, Julian, Bayliss, Christopher D., Grant, Andrew, Maskell, Duncan, Didelot, Xavier, Kelly, David J., Sheppard, Samuel K.

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Genetic requirements for Moraxella catarrhalis growth under iron‐limiting conditions von Vries, Stefan P. W., Burghout, Peter, Langereis, Jeroen D., Zomer, Aldert, Hermans, Peter W. M., Bootsma, Hester J.

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Reduction in intestinal colonization and invasion of internal organs after challenge by homologous and heterologous serovars of Salmonella enterica following vaccination of chicken... von Crouch, Colin F., Pugh, Chris, Patel, Amit, Brink, Helen, Wharmby, Chris, Watts, Anna, van Hulten, Marielle C. W., de Vries, Stefan P. W.

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Essential Genes for In Vitro Growth of the Endophyte Herbaspirillum seropedicae SmR1 as Revealed by Transposon Insertion Site Sequencing von Rosconi, Federico, de Vries, Stefan P W, Baig, Abiyad, Fabiano, Elena, Grant, Andrew J

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Genome Sequence of Moraxella catarrhalis RH4, an Isolate of Seroresistant Lineage von ZOMER, Aldert, DE VRIES, Stefan P. W, RIESBECK, Kristian, MEINKE, Andreas L, HERMANS, Peter W. M, BOOTSMA, Hester J

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Characterization of the molecular interplay between Moraxella catarrhalis and human respiratory tract epithelial cells von de Vries, Stefan P W, Eleveld, Marc J, Hermans, Peter W M, Bootsma, Hester J

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Genomic variations leading to alterations in cell morphology of Campylobacter spp von Esson, Diane, Mather, Alison E., Scanlan, Eoin, Gupta, Srishti, de Vries, Stefan P. W., Bailey, David, Harris, Simon R., McKinley, Trevelyan J., Méric, Guillaume, Berry, Sophia K., Mastroeni, Pietro, Sheppard, Samuel K., Christie, Graham, Thomson, Nicholas R., Parkhill, Julian, Maskell, Duncan J., Grant, Andrew J.

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Biomarker Research in ADHD: the Impact of Nutrition (BRAIN) - study protocol of an open-label trial to investigate the mechanisms underlying the effects of a few-foods diet on ADHD... von Stobernack, Tim, de Vries, Stefan P W, Rodrigues Pereira, Rob, Pelsser, Lidy M, ter Braak, Cajo J F, Aarts, Esther, van Baarlen, Peter, Kleerebezem, Michiel, Frankena, Klaas, Hontelez, Saartje

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Deciphering the genetic basis of Moraxella catarrhalis complement resistance: a critical role for the disulphide bond formation system von Vries, Stefan P. W., Rademakers, Rob J. A., Gaast‐de Jongh, Christa E., Eleveld, Marc J., Hermans, Peter W. M., Bootsma, Hester J.

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Modified lipooligosaccharide structure protects nontypeable Haemophilus influenzae from IgM-mediated complement killing in experimental otitis media von Langereis, Jeroen D, Stol, Kim, Schweda, Elke K, Twelkmeyer, Brigitte, Bootsma, Hester J, de Vries, Stefan P W, Burghout, Peter, Diavatopoulos, Dimitri A, Hermans, Peter W M

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Genome and Plasmid Sequences of Escherichia coli KV7, an Extended-Spectrum β-Lactamase Isolate Derived from Feces of a Healthy Pig von Bateman, Michael D, de Vries, Stefan P W, Gupta, Srishti, Guardabassi, Luca, Cavaco, Lina M, Grant, Andrew J, Holmes, Mark A

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Enterohemorrhagic Escherichia coli responds to gut microbiota metabolites by altering metabolism and activating stress responses von Vogt, Stefanie L., Serapio-Palacios, Antonio, Woodward, Sarah E., Santos, Andrew S., de Vries, Stefan P.W., Daigneault, Michelle C., Brandmeier, Lisa V., Grant, Andrew J., Maskell, Duncan J., Allen-Vercoe, Emma, Finlay, B. Brett

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