Gene expression profiles from formalin fixed paraffin embedded breast cancer tissue are largely comparable to fresh frozen matched tissue von Mittempergher, Lorenza, de Ronde, Jorma J, Nieuwland, Marja, Kerkhoven, Ron M, Simon, Iris, Rutgers, Emiel J Th, Wessels, Lodewyk F A, Van't Veer, Laura J

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Breast cancer subtype specific classifiers of response to neoadjuvant chemotherapy do not outperform classifiers trained on all subtypes von de Ronde, Jorma J, Bonder, Marc Jan, Lips, Esther H, Rodenhuis, Sjoerd, Wessels, Lodewyk F A

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REV7 counteracts DNA double-strand break resection and affects PARP inhibition von Xu, Guotai, Chapman, J. Ross, Brandsma, Inger, Yuan, Jingsong, Mistrik, Martin, Bouwman, Peter, Bartkova, Jirina, Gogola, Ewa, Warmerdam, Daniël, Barazas, Marco, Jaspers, Janneke E., Watanabe, Kenji, Pieterse, Mark, Kersbergen, Ariena, Sol, Wendy, Celie, Patrick H. N., Schouten, Philip C., van den Broek, Bram, Salman, Ahmed, Nieuwland, Marja, de Rink, Iris, de Ronde, Jorma, Jalink, Kees, Boulton, Simon J., Chen, Junjie, van Gent, Dik C., Bartek, Jiri, Jonkers, Jos, Borst, Piet, Rottenberg, Sven

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Lobular histology and response to neoadjuvant chemotherapy in invasive breast cancer von Lips, Esther H., Mukhtar, Rita A., Yau, Christina, de Ronde, Jorma J., Livasy, Chad, Carey, Lisa A., Loo, Claudette E., Vrancken-Peeters, Marie-Jeanne T. F. D., Sonke, Gabe S., Berry, Donald A., van‘t Veer, Laura J., Esserman, Laura J., Wesseling, Jelle, Rodenhuis, Sjoerd, Shelley Hwang, E.

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KC-SMARTR: An R package for detection of statistically significant aberrations in multi-experiment aCGH data von de Ronde, Jorma J, Klijn, Christiaan, Velds, Arno, Holstege, Henne, Reinders, Marcel Jt, Jonkers, Jos, Wessels, Lodewyk Fa

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Concordance of clinical and molecular breast cancer subtyping in the context of preoperative chemotherapy response von de Ronde, Jorma J, Hannemann, Juliane, Halfwerk, Hans, Mulder, Lennart, Straver, Marieke E, Vrancken Peeters, Marie-Jeanne T. F. D, Wesseling, Jelle, van de Vijver, Marc, Wessels, Lodewyk F. A, Rodenhuis, Sjoerd

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Identifying subgroup markers in heterogeneous populations von de Ronde, Jorma J, Rigaill, Guillem, Rottenberg, Sven, Rodenhuis, Sjoerd, Wessels, Lodewyk F A

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Platform comparisons for identification of breast cancers with a BRCA-like copy number profile von Schouten, Philip C., van Dyk, Ewald, Braaf, Linde M., Mulder, Lennart, Lips, Esther H., de Ronde, Jorma J., Holtman, Laura, Wesseling, Jelle, Hauptmann, Michael, Wessels, Lodewyk F. A., Linn, Sabine C., Nederlof, Petra M.

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Selection of Patients for Hepatic Surgery of Colorectal Cancer Liver Metastasis Based on Genomic Aberrations von Bruin, Sjoerd C., de Ronde, Jorma J., Wiering, Bas, Braaf, Linde M., de Wilt, J. H. W., Vincent, Andrew D., van Velthuysen, Marie-Louise F., Ruers, T. J., Wessels, Lodewyk F.A., van’t Veer, Laura J.

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SERPINA6, BEX1, AGTR1, SLC26A3, and LAPTM4B are markers of resistance to neoadjuvant chemotherapy in HER2-negative breast cancer von de Ronde, Jorma J., Lips, Esther H., Mulder, Lennart, Vincent, Andrew D., Wesseling, Jelle, Nieuwland, Marja, Kerkhoven, Ron, Vrancken Peeters, Marie-Jeanne T. F. D., Sonke, Gabe S., Rodenhuis, Sjoerd, Wessels, Lodewyk F. A.

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The T7-primer is a source of experimental bias and introduces variability between microarray platforms von Kerkhoven, Ron M, Sie, Daoud, Nieuwland, Marja, Heimerikx, Mike, De Ronde, Jorma, Brugman, Wim, Velds, Arno

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Molecular subtyping of breast cancer: ready to use? von de Ronde, Jorma, Wessels, Lodewyk, Wesseling, Jelle

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Impact of Intertumoral Heterogeneity on Predicting Chemotherapy Response of BRCA1-Deficient Mammary Tumors von ROTTENBERG, Sven, VOLLEBERGH, Marieke A, LODEN, Martin, SOL, Wendy, DER BURG, Eline Van, WESSELING, Jelle, GILLET, Jean-Pierre, GOTTESMAN, Michael M, GRIBNAU, Joost, WESSELS, Lodewyk, LINN, Sabine C, JONKERS, Jos, DE HOON, Bas, BORST, Piet, DE RONDE, Jorma, SCHOUTEN, Philip C, KERSBERGEN, Ariena, ZANDER, SergeA. L, PAJIC, Marina, JASPERS, Janneke E, JONKERS, Martijn

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Abstract 22: Identifying chemotherapy resistance genes using outlier detection von De Ronde, Jorma, Mulder, Lennart, Lips, Esther, Rodenhuis, Sjoerd, Wessels, Lodewyk

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REV7 counteracts DNA double-strand break resection and impacts PARP inhibition von Xu, Guotai, Chapman, J. Ross, Brandsma, Inger, Yuan, Jingsong, Mistrik, Martin, Bouwman, Peter, Bartkova, Jirina, Gogola, Ewa, Warmerdam, Daniël, Barazas, Marco, Jaspers, Janneke E., Watanabe, Kenji, Pieterse, Mark, Kersbergen, Ariena, Sol, Wendy, Celie, Patrick H. N., Schouten, Philip C., van den Broek, Bram, Salman, Ahmed, Nieuwland, Marja, de Rink, Iris, de Ronde, Jorma, Jalink, Kees, Boulton, Simon J., Chen, Junjie, van Gent, Dik C., Bartek, Jiri, Jonkers, Jos, Borst, Piet, Rottenberg, Sven

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Abstract 4834: Microarray gene expression analysis on formalin-fixed, paraffin embedded material is feasible and the resulting profiles are comparable to profiles from fresh frozen... von Mittempergher, Lorenza, de Ronde, Jorma J., Nieuwland, Marja, Kerkhoven, Ron M., Simon, Iris, Wessels, Lodewyk FA, Van ‘t Veer, Laura J.

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Abstract 3134: Neoadjuvant chemotherapy in ER+HER2- breast cancer: Response prediction based on immunohistochemical and molecular characteristics von Lips, Esther H., Mulder, Lennart, De Ronde, Jorma J., Mandjes, Ingrid A.M., Vincent, Andrew A., Vrancken-Peeters, Marie-Jeanne T.F.D, Nederlof, Petra M., Wesseling, Jelle, Rodenhuis, Sjoerd

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