Comprehensive benchmark and architectural analysis of deep learning models for nanopore sequencing basecalling von Pagès-Gallego, Marc, de Ridder, Jeroen

Volltext

A data-driven interactome of synergistic genes improves network-based cancer outcome prediction von Allahyar, Amin, Ubels, Joske, de Ridder, Jeroen

Volltext

Hi-C Chromatin Interaction Networks Predict Co-expression in the Mouse Cortex von Babaei, Sepideh, Mahfouz, Ahmed, Hulsman, Marc, Lelieveldt, Boudewijn P F, de Ridder, Jeroen, Reinders, Marcel

Volltext

Predicting pathogenic non-coding SVs disrupting the 3D genome in 1646 whole cancer genomes using multiple instance learning von Nieboer, Marleen M., Nguyen, Luan, de Ridder, Jeroen

Volltext

Chromatin Position Effects Assayed by Thousands of Reporters Integrated in Parallel von Akhtar, Waseem, de Jong, Johann, Pindyurin, Alexey V., Pagie, Ludo, Meuleman, Wouter, de Ridder, Jeroen, Berns, Anton, Wessels, Lodewyk F.A., van Lohuizen, Maarten, van Steensel, Bas

Volltext

Value pluralism in research integrity von Peels, Rik, de Ridder, Jeroen, Haven, Tamarinde, Bouter, Lex

Volltext

Scientism: Prospects and Problems ed. by Jeroen de Ridder, Rik Peels, and René van Woudenberg (review) von Feser, Edward

Volltext

Academia's Big Five: a normative taxonomy for the epistemic responsibilities of universities [version 2; peer review: 2 approved] von Peels, Rik, van Woudenberg, René, de Ridder, Jeroen, Bouter, Lex

Volltext

Molecular heterogeneity and early metastatic clone selection in testicular germ cell cancer development von Dorssers, Lambert C. J., Gillis, Ad J. M., Stoop, Hans, van Marion, Ronald, Nieboer, Marleen M., van Riet, Job, van de Werken, Harmen J. G., Oosterhuis, J. Wolter, de Ridder, Jeroen, Looijenga, Leendert H. J.

Volltext

Cancer Type Classification in Liquid Biopsies Based on Sparse Mutational Profiles Enabled through Data Augmentation and Integration von Danyi, Alexandra, Jager, Myrthe, de Ridder, Jeroen

Volltext

Detecting statistically significant common insertion sites in retroviral insertional mutagenesis screens von de Ridder, Jeroen, Uren, Anthony, Kool, Jaap, Reinders, Marcel, Wessels, Lodewyk

Volltext

Mechanistic artefact explanation von Ridder, Jeroen de

Volltext

Gamma-Retrovirus Integration Marks Cell Type-Specific Cancer Genes: A Novel Profiling Tool in Cancer Genomics von Gilroy, Kathryn L, Terry, Anne, Naseer, Asif, de Ridder, Jeroen, Allahyar, Amin, Wang, Weiwei, Carpenter, Eric, Mason, Andrew, Wong, Gane K-S, Cameron, Ewan R, Kilbey, Anna, Neil, James C

Volltext

Enhancer hubs and loop collisions identified from single-allele topologies von Allahyar, Amin, Vermeulen, Carlo, Bouwman, Britta A. M., Krijger, Peter H. L., Verstegen, Marjon J. A. M., Geeven, Geert, van Kranenburg, Melissa, Pieterse, Mark, Straver, Roy, Haarhuis, Judith H. I., Jalink, Kees, Teunissen, Hans, Renkens, Ivo J., Kloosterman, Wigard P., Rowland, Benjamin D., de Wit, Elzo, de Ridder, Jeroen, de Laat, Wouter

Volltext

Enthalpy and Entropy Barriers Explain the Effects of Topology on the Kinetics of Zeolite-Catalyzed Reactions von Van der Mynsbrugge, Jeroen, De Ridder, Jeroen, Hemelsoet, Karen, Waroquier, Michel, Van Speybroeck, Veronique

Volltext

Online and Offline Battles: Usage of Different Political Conflict Frames von van der Goot, Emma, Kruikemeier, Sanne, de Ridder, Jeroen, Vliegenthart, Rens

Volltext

Predicting response to enzalutamide and abiraterone in metastatic prostate cancer using whole-omics machine learning von de Jong, Anouk C., Danyi, Alexandra, van Riet, Job, de Wit, Ronald, Sjöström, Martin, Feng, Felix, de Ridder, Jeroen, Lolkema, Martijn P.

Volltext

Wetenschap en sciëntisme in de populaire wetenschap von de Ridder, Jeroen

Volltext

Predicting treatment benefit in multiple myeloma through simulation of alternative treatment effects von Ubels, Joske, Sonneveld, Pieter, van Beers, Erik H., Broijl, Annemiek, van Vliet, Martin H., de Ridder, Jeroen

Volltext

Scale-space measures for graph topology link protein network architecture to function von Hulsman, Marc, Dimitrakopoulos, Christos, de Ridder, Jeroen

Volltext