DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome von Ji, Yanrong, Zhou, Zhihan, Liu, Han, Davuluri, Ramana V

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ADAR1 Forms a Complex with Dicer to Promote MicroRNA Processing and RNA-Induced Gene Silencing von Ota, Hiromitsu, Sakurai, Masayuki, Gupta, Ravi, Valente, Louis, Wulff, Bjorn-Erik, Ariyoshi, Kentaro, Iizasa, Hisashi, Davuluri, Ramana V., Nishikura, Kazuko

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TransTEx: novel tissue-specificity scoring method for grouping human transcriptome into different expression groups von Surana, Pallavi, Dutta, Pratik, Davuluri, Ramana V

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ExTraMapper: exon- and transcript-level mappings for orthologous gene pairs von Chakraborty, Abhijit, Ay, Ferhat, Davuluri, Ramana V

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Epigenetic priming enhances antitumor immunity in platinum-resistant ovarian cancer von Chen, Siqi, Xie, Ping, Cowan, Matthew, Huang, Hao, Cardenas, Horacio, Keathley, Russell, Tanner, Edward J, Fleming, Gini F, Moroney, John W, Pant, Alok, Akasha, Azza M, Davuluri, Ramana V, Kocherginsky, Masha, Zhang, Bin, Matei, Daniela

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FTO-Dependent N 6 -Methyladenosine Modifications Inhibit Ovarian Cancer Stem Cell Self-Renewal by Blocking cAMP Signaling von Huang, Hao, Wang, Yinu, Kandpal, Manoj, Zhao, Guangyuan, Cardenas, Horacio, Ji, Yanrong, Chaparala, Anusha, Tanner, Edward J, Chen, Jianjun, Davuluri, Ramana V, Matei, Daniela

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Frizzled-7 Identifies Platinum-Tolerant Ovarian Cancer Cells Susceptible to Ferroptosis von Wang, Yinu, Zhao, Guangyuan, Condello, Salvatore, Huang, Hao, Cardenas, Horacio, Tanner, Edward J, Wei, JianJun, Ji, Yanrong, Li, Junjie, Tan, Yuying, Davuluri, Ramana V, Peter, Marcus E, Cheng, Ji-Xin, Matei, Daniela

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Metastatic cancers promote cachexia through ZIP14 upregulation in skeletal muscle von Wang, Gang, Biswas, Anup K., Ma, Wanchao, Kandpal, Manoj, Coker, Courtney, Grandgenett, Paul M., Hollingsworth, Michael A., Jain, Rinku, Tanji, Kurenai, Lόpez-Pintado, Sara, Borczuk, Alain, Hebert, Doreen, Jenkitkasemwong, Supak, Hojyo, Shintaro, Davuluri, Ramana V., Knutson, Mitchell D., Fukada, Toshiyuki, Acharyya, Swarnali

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Alternative transcription and alternative splicing in cancer von Pal, Sharmistha, Gupta, Ravi, Davuluri, Ramana V

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Imaging patterns predict patient survival and molecular subtype in glioblastoma via machine learning techniques von Macyszyn, Luke, Akbari, Hamed, Pisapia, Jared M, Da, Xiao, Attiah, Mark, Pigrish, Vadim, Bi, Yingtao, Pal, Sharmistha, Davuluri, Ramana V, Roccograndi, Laura, Dahmane, Nadia, Martinez-Lage, Maria, Biros, George, Wolf, Ronald L, Bilello, Michel, O'Rourke, Donald M, Davatzikos, Christos

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Genetic Predisposition to Papillary Thyroid Carcinoma: Involvement of FOXE1, TSHR, and a Novel lincRNA Gene, PTCSC2 von He, Huiling, Li, Wei, Liyanarachchi, Sandya, Jendrzejewski, Jaroslaw, Srinivas, Mukund, Davuluri, Ramana V, Nagy, Rebecca, de la Chapelle, Albert

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Rapid, High-Throughput Single-Cell Multiplex In Situ Tagging (MIST) Analysis of Immunological Disease with Machine Learning von Yang, Liwei, Dutta, Pratik, Davuluri, Ramana V., Wang, Jun

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NPEBseq: nonparametric empirical bayesian-based procedure for differential expression analysis of RNA-seq data von Bi, Yingtao, Davuluri, Ramana V

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polymorphism rs944289 predisposes to papillary thyroid carcinoma through a large intergenic noncoding RNA gene of tumor suppressor type von Jendrzejewski, Jaroslaw, He, Huiling, Radomska, Hanna S, Li, Wei, Tomsic, Jerneja, Liyanarachchi, Sandya, Davuluri, Ramana V, Nagy, Rebecca, de la Chapelle, Albert

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RP58 Represses Transcriptional Programs Linked to Nonneuronal Cell Identity and Glioblastoma Subtypes in Developing Neurons von Xiang, Chaomei, Frietze, Karla K., Bi, Yingtao, Li, Yanwen, Dal Pozzo, Valentina, Pal, Sharmistha, Alexander, Noah, Baubet, Valerie, D'Acunto, Victoria, Mason, Christopher E., Davuluri, Ramana V., Dahmane, Nadia

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In silico analysis of alternative splicing on drug-target gene interactions von Ji, Yanrong, Mishra, Rama K., Davuluri, Ramana V.

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Cancer-Associated IDH1 Promotes Growth and Resistance to Targeted Therapies in the Absence of Mutation von Calvert, Andrea E., Chalastanis, Alexandra, Wu, Yongfei, Hurley, Lisa A., Kouri, Fotini M., Bi, Yingtao, Kachman, Maureen, May, Jasmine L., Bartom, Elizabeth, Hua, Youjia, Mishra, Rama K., Schiltz, Gary E., Dubrovskyi, Oleksii, Mazar, Andrew P., Peter, Marcus E., Zheng, Hongwu, James, C. David, Burant, Charles F., Chandel, Navdeep S., Davuluri, Ramana V., Horbinski, Craig, Stegh, Alexander H.

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Radiomic MRI signature reveals three distinct subtypes of glioblastoma with different clinical and molecular characteristics, offering prognostic value beyond IDH1 von Rathore, Saima, Akbari, Hamed, Rozycki, Martin, Abdullah, Kalil G., Nasrallah, MacLean P., Binder, Zev A., Davuluri, Ramana V., Lustig, Robert A., Dahmane, Nadia, Bilello, Michel, O’Rourke, Donald M., Davatzikos, Christos

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Personizing the prediction of future susceptibility to a specific disease von Taha, Kamal, Davuluri, Ramana, Yoo, Paul, Spencer, Jesse

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AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors von Davuluri, Ramana V, Sun, Hao, Palaniswamy, Saranyan K, Matthews, Nicole, Molina, Carlos, Kurtz, Mike, Grotewold, Erich

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