Single sample scoring of molecular phenotypes von Foroutan, Momeneh, Bhuva, Dharmesh D, Lyu, Ruqian, Horan, Kristy, Cursons, Joseph, Davis, Melissa J

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A Gene Signature Predicting Natural Killer Cell Infiltration and Improved Survival in Melanoma Patients von Cursons, Joseph, Souza-Fonseca-Guimaraes, Fernando, Foroutan, Momeneh, Anderson, Ashley, Hollande, Frédéric, Hediyeh-Zadeh, Soroor, Behren, Andreas, Huntington, Nicholas D, Davis, Melissa J

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standR: spatial transcriptomic analysis for GeoMx DSP data von Liu, Ning, Bhuva, Dharmesh D, Mohamed, Ahmed, Bokelund, Micah, Kulasinghe, Arutha, Tan, Chin Wee, Davis, Melissa J

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Differential co-expression-based detection of conditional relationships in transcriptional data: comparative analysis and application to breast cancer von Bhuva, Dharmesh D, Cursons, Joseph, Smyth, Gordon K, Davis, Melissa J

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NK cell-derived GM-CSF potentiates inflammatory arthritis and is negatively regulated by CIS von Louis, Cynthia, Souza-Fonseca-Guimaraes, Fernando, Yang, Yuyan, D'Silva, Damian, Kratina, Tobias, Dagley, Laura, Hediyeh-Zadeh, Soroor, Rautela, Jai, Masters, Seth Lucian, Davis, Melissa J, Babon, Jeffrey J, Ciric, Bogoljub, Vivier, Eric, Alexander, Warren S, Huntington, Nicholas D, Wicks, Ian P

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Construction of developmental lineage relationships in the mouse mammary gland by single-cell RNA profiling von Pal, Bhupinder, Chen, Yunshun, Vaillant, François, Jamieson, Paul, Gordon, Lavinia, Rios, Anne C., Wilcox, Stephen, Fu, Naiyang, Liu, Kevin He, Jackling, Felicity C., Davis, Melissa J., Lindeman, Geoffrey J., Smyth, Gordon K., Visvader, Jane E.

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Structure-Based Reassessment of the Caveolin Signaling Model: Do Caveolae Regulate Signaling through Caveolin-Protein Interactions? von Collins, Brett M., Davis, Melissa J., Hancock, John F., Parton, Robert G.

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Metastasis-Entrained Eosinophils Enhance Lymphocyte-Mediated Antitumor Immunity von Grisaru-Tal, Sharon, Dulberg, Shai, Beck, Lir, Zhang, Chunyan, Itan, Michal, Hediyeh-Zadeh, Soroor, Caldwell, Julie, Rozenberg, Perri, Dolitzky, Avishay, Avlas, Shmuel, Hazut, Inbal, Gordon, Yaara, Shani, Ophir, Tsuriel, Shlomo, Gerlic, Motti, Erez, Neta, Jacquelot, Nicolas, Belz, Gabrielle T, Rothenberg, Marc E, Davis, Melissa J, Yu, Hua, Geiger, Tamar, Madi, Asaf, Munitz, Ariel

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PRMT1-mediated H4R3me2a recruits SMARCA4 to promote colorectal cancer progression by enhancing EGFR signaling von Yao, Bing, Gui, Tao, Zeng, Xiangwei, Deng, Yexuan, Wang, Zhi, Wang, Ying, Yang, Dongjun, Li, Qixiang, Xu, Peipei, Hu, Ruifeng, Li, Xinyu, Chen, Bing, Wang, Jin, Zen, Ke, Li, Haitao, Davis, Melissa J, Herold, Marco J, Pan, Hua-Feng, Jiang, Zhi-Wei, Huang, David C S, Liu, Ming, Ju, Junyi, Zhao, Quan

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Inhibition of CDK4/6 by Palbociclib Significantly Extends Survival in Medulloblastoma Patient-Derived Xenograft Mouse Models von Cook Sangar, Michelle L, Genovesi, Laura A, Nakamoto, Madison W, Davis, Melissa J, Knobluagh, Sue E, Ji, Pengxiang, Millar, Amanda, Wainwright, Brandon J, Olson, James M

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vissE: a versatile tool to identify and visualise higher-order molecular phenotypes from functional enrichment analysis von Bhuva, Dharmesh D, Tan, Chin Wee, Liu, Ning, Whitfield, Holly J, Papachristos, Nicholas, Lee, Samuel C, Kharbanda, Malvika, Mohamed, Ahmed, Davis, Melissa J

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Large-scale protein-protein post-translational modification extraction with distant supervision and confidence calibrated BioBERT von Elangovan, Aparna, Li, Yuan, Pires, Douglas E V, Davis, Melissa J, Verspoor, Karin

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Library size confounds biology in spatial transcriptomics data von Bhuva, Dharmesh D, Tan, Chin Wee, Salim, Agus, Marceaux, Claire, Pickering, Marie A, Chen, Jinjin, Kharbanda, Malvika, Jin, Xinyi, Liu, Ning, Feher, Kristen, Putri, Givanna, Tilley, Wayne D, Hickey, Theresa E, Asselin-Labat, Marie-Liesse, Phipson, Belinda, Davis, Melissa J

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Gene regulatory network inference: evaluation and application to ovarian cancer allows the prioritization of drug targets von Madhamshettiwar, Piyush B, Maetschke, Stefan R, Davis, Melissa J, Reverter, Antonio, Ragan, Mark A

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Dissection of the bone marrow microenvironment in hairy cell leukaemia identifies prognostic tumour and immune related biomarkers von Koldej, Rachel M., Prabahran, Ashvind, Tan, Chin Wee, Ng, Ashley P., Davis, Melissa J., Ritchie, David S.

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Salivary DNA methylation panel to diagnose HPV-positive and HPV-negative head and neck cancers von Lim, Yenkai, Wan, Yunxia, Vagenas, Dimitrios, Ovchinnikov, Dmitry A, Perry, Chris F L, Davis, Melissa J, Punyadeera, Chamindie

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Type 2 Innate Lymphoid Cells Protect against Colorectal Cancer Progression and Predict Improved Patient Survival von Huang, Qiutong, Jacquelot, Nicolas, Preaudet, Adele, Hediyeh-Zadeh, Soroor, Souza-Fonseca-Guimaraes, Fernando, McKenzie, Andrew N J, Hansbro, Philip M, Davis, Melissa J, Mielke, Lisa A, Putoczki, Tracy L, Belz, Gabrielle T

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NK Cell Priming From Endogenous Homeostatic Signals Is Modulated by CIS von Delconte, Rebecca B, Guittard, Geoffrey, Goh, Wilford, Hediyeh-Zadeh, Soroor, Hennessy, Robert J, Rautela, Jai, Davis, Melissa J, Souza-Fonseca-Guimaraes, Fernando, Nunès, Jacques A, Huntington, Nicholas D

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Spatial proteomics identifies a spectrum of immune dysregulation in acquired bone marrow failure syndromes von Koldej, Rachel M., Prabahran, Ashvind, Tan, Chin Wee, Ludford-Menting, Mandy, Morgan, Huw, Holzwart, Nicholas, Davis, Melissa J., Ritchie, David S.

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Spatial transcriptomic analysis of Sonic hedgehog medulloblastoma identifies that the loss of heterogeneity and promotion of differentiation underlies the response to CDK4/6 inhibi... von Vo, Tuan, Balderson, Brad, Jones, Kahli, Ni, Guiyan, Crawford, Joanna, Millar, Amanda, Tolson, Elissa, Singleton, Matthew, Kojic, Marija, Robertson, Thomas, Walters, Shaun, Mulay, Onkar, Bhuva, Dharmesh D, Davis, Melissa J, Wainwright, Brandon J, Nguyen, Quan, Genovesi, Laura A

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