Host-Viral Infection Maps Reveal Signatures of Severe COVID-19 Patients von Bost, Pierre, Giladi, Amir, Liu, Yang, Bendjelal, Yanis, Xu, Gang, David, Eyal, Blecher-Gonen, Ronnie, Cohen, Merav, Medaglia, Chiara, Li, Hanjie, Deczkowska, Aleksandra, Zhang, Shuye, Schwikowski, Benno, Zhang, Zheng, Amit, Ido

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Chromatin state dynamics during blood formation von Lara-Astiaso, David, Weiner, Assaf, Lorenzo-Vivas, Erika, Zaretsky, Irina, Jaitin, Diego Adhemar, David, Eyal, Keren-Shaul, Hadas, Mildner, Alexander, Winter, Deborah, Jung, Steffen, Friedman, Nir, Amit, Ido

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Aging-induced type I interferon response at the choroid plexus negatively affects brain function von Baruch, Kuti, Deczkowska, Aleksandra, David, Eyal, Castellano, Joseph M., Miller, Omer, Kertser, Alexander, Berkutzki, Tamara, Barnett-Itzhaki, Zohar, Bezalel, Dana, Wyss-Coray, Tony, Amit, Ido, Schwartz, Michal

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Microglia development follows a stepwise program to regulate brain homeostasis von Matcovitch-Natan, Orit, Winter, Deborah R., Guadi, Amir, Aguilar, Stephanie Vargas, Spinrad, Amit, Sarrazin, Sandrine, Ben-Yehuda, Hila, David, Eyal, González, Fabiola Zelada, Perrin, Pierre, Keren-Shaul, Hadas, Gury, Meital, Lara-Astaiso, David, Thaiss, Christoph A., Cohen, Merav, Halpern, Keren Bahar, Baruch, Kuti, Deczkowska, Aleksandra, Lorenzo-Vivas, Erika, Itzkovitz, Shalev, Elinav, Eran, Sieweke, Michael H., Schwartz, Michal, Amit, Ido

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Dissecting cellular crosstalk by sequencing physically interacting cells von Giladi, Amir, Cohen, Merav, Medaglia, Chiara, Baran, Yael, Li, Baoguo, Zada, Mor, Bost, Pierre, Blecher-Gonen, Ronnie, Salame, Tomer-Meir, Mayer, Johannes U., David, Eyal, Ronchese, Franca, Tanay, Amos, Amit, Ido

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Multi-tissue single-cell analysis deconstructs the complex programs of mouse natural killer and type 1 innate lymphoid cells in tissues and circulation von McFarland, Adelle P., Yalin, Adam, Wang, Shuang-Yin, Cortez, Victor S., Landsberger, Tomer, Sudan, Raki, Peng, Vincent, Miller, Hannah L., Ricci, Biancamaria, David, Eyal, Faccio, Roberta, Amit, Ido, Colonna, Marco

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Spatial reconstruction of immune niches by combining photoactivatable reporters and scRNA-seq von Medaglia, Chiara, Giladi, Amir, Stoler-Barak, Liat, De Giovanni, Marco, Salame, Tomer Meir, Biram, Adi, David, Eyal, Li, Hanjie, Iannacone, Matteo, Shulman, Ziv, Amit, Ido

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Engrafted parenchymal brain macrophages differ from microglia in transcriptome, chromatin landscape and response to challenge von Shemer, Anat, Grozovski, Jonathan, Tay, Tuan Leng, Tao, Jenhan, Volaski, Alon, Süß, Patrick, Ardura-Fabregat, Alberto, Gross-Vered, Mor, Kim, Jung-Seok, David, Eyal, Chappell-Maor, Louise, Thielecke, Lars, Glass, Christopher K., Cornils, Kerstin, Prinz, Marco, Jung, Steffen

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Lipid-Associated Macrophages Control Metabolic Homeostasis in a Trem2-Dependent Manner von Jaitin, Diego Adhemar, Adlung, Lorenz, Thaiss, Christoph A., Weiner, Assaf, Li, Baoguo, Descamps, Hélène, Lundgren, Patrick, Bleriot, Camille, Liu, Zhaoyuan, Deczkowska, Aleksandra, Keren-Shaul, Hadas, David, Eyal, Zmora, Niv, Eldar, Shai Meron, Lubezky, Nir, Shibolet, Oren, Hill, David A., Lazar, Mitchell A., Colonna, Marco, Ginhoux, Florent, Shapiro, Hagit, Elinav, Eran, Amit, Ido

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MARS-seq2.0: an experimental and analytical pipeline for indexed sorting combined with single-cell RNA sequencing von Keren-Shaul, Hadas, Kenigsberg, Ephraim, Jaitin, Diego Adhemar, David, Eyal, Paul, Franziska, Tanay, Amos, Amit, Ido

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Genomic Characterization of Murine Monocytes Reveals C/EBPβ Transcription Factor Dependence of Ly6C− Cells von Mildner, Alexander, Schönheit, Jörg, Giladi, Amir, David, Eyal, Lara-Astiaso, David, Lorenzo-Vivas, Erika, Paul, Franziska, Chappell-Maor, Louise, Priller, Josef, Leutz, Achim, Amit, Ido, Jung, Steffen

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Mef2C restrains microglial inflammatory response and is lost in brain ageing in an IFN-I-dependent manner von Deczkowska, Aleksandra, Matcovitch-Natan, Orit, Tsitsou-Kampeli, Afroditi, Ben-Hamo, Sefi, Dvir-Szternfeld, Raz, Spinrad, Amit, Singer, Oded, David, Eyal, Winter, Deborah R., Smith, Lucas K., Kertser, Alexander, Baruch, Kuti, Rosenzweig, Neta, Terem, Anna, Prinz, Marco, Villeda, Saul, Citri, Ami, Amit, Ido, Schwartz, Michal

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Single cell dissection of plasma cell heterogeneity in symptomatic and asymptomatic myeloma von Ledergor, Guy, Weiner, Assaf, Zada, Mor, Wang, Shuang-Yin, Cohen, Yael C., Gatt, Moshe E., Snir, Nimrod, Magen, Hila, Koren-Michowitz, Maya, Herzog-Tzarfati, Katrin, Keren-Shaul, Hadas, Bornstein, Chamutal, Rotkopf, Ron, Yofe, Ido, David, Eyal, Yellapantula, Venkata, Kay, Sigalit, Salai, Moshe, Ben Yehuda, Dina, Nagler, Arnon, Shvidel, Lev, Orr-Urtreger, Avi, Halpern, Keren Bahar, Itzkovitz, Shalev, Landgren, Ola, San-Miguel, Jesus, Paiva, Bruno, Keats, Jonathan J., Papaemmanuil, Elli, Avivi, Irit, Barbash, Gabriel I., Tanay, Amos, Amit, Ido

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Trained Memory of Human Uterine NK Cells Enhances Their Function in Subsequent Pregnancies von Gamliel, Moriya, Goldman-Wohl, Debra, Isaacson, Batya, Gur, Chamutal, Stein, Natan, Yamin, Rachel, Berger, Michael, Grunewald, Myriam, Keshet, Eli, Rais, Yoach, Bornstein, Chamutal, David, Eyal, Jelinski, Adam, Eisenberg, Iris, Greenfield, Caryn, Ben-David, Arbel, Imbar, Tal, Gilad, Ronit, Haimov-Kochman, Ronit, Mankuta, David, Elami-Suzin, Matan, Amit, Ido, Hanna, Jacob H., Yagel, Simcha, Mandelboim, Ofer

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Matching by Tone Mapping: Photometric Invariant Template Matching von Hel-Or, Yacov, Hel-Or, Hagit, David, Eyal

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Re-evaluating microglia expression profiles using RiboTag and cell isolation strategies von Haimon, Zhana, Volaski, Alon, Orthgiess, Johannes, Boura-Halfon, Sigalit, Varol, Diana, Shemer, Anat, Yona, Simon, Zuckerman, Binyamin, David, Eyal, Chappell-Maor, Louise, Bechmann, Ingo, Gericke, Martin, Ulitsky, Igor, Jung, Steffen

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Microbiota-Modulated Metabolites Shape the Intestinal Microenvironment by Regulating NLRP6 Inflammasome Signaling von Levy, Maayan, Thaiss, Christoph A., Zeevi, David, Dohnalová, Lenka, Zilberman-Schapira, Gili, Mahdi, Jemal Ali, David, Eyal, Savidor, Alon, Korem, Tal, Herzig, Yonatan, Pevsner-Fischer, Meirav, Shapiro, Hagit, Christ, Anette, Harmelin, Alon, Halpern, Zamir, Latz, Eicke, Flavell, Richard A., Amit, Ido, Segal, Eran, Elinav, Eran

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Lung Single-Cell Signaling Interaction Map Reveals Basophil Role in Macrophage Imprinting von Cohen, Merav, Giladi, Amir, Gorki, Anna-Dorothea, Solodkin, Dikla Gelbard, Zada, Mor, Hladik, Anastasiya, Miklosi, Andras, Salame, Tomer-Meir, Halpern, Keren Bahar, David, Eyal, Itzkovitz, Shalev, Harkany, Tibor, Knapp, Sylvia, Amit, Ido

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Microbiota Diurnal Rhythmicity Programs Host Transcriptome Oscillations von Thaiss, Christoph A., Levy, Maayan, Korem, Tal, Dohnalová, Lenka, Shapiro, Hagit, Jaitin, Diego A., David, Eyal, Winter, Deborah R., Gury-BenAri, Meital, Tatirovsky, Evgeny, Tuganbaev, Timur, Federici, Sara, Zmora, Niv, Zeevi, David, Dori-Bachash, Mally, Pevsner-Fischer, Meirav, Kartvelishvily, Elena, Brandis, Alexander, Harmelin, Alon, Shibolet, Oren, Halpern, Zamir, Honda, Kenya, Amit, Ido, Segal, Eran, Elinav, Eran

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Brown-adipose-tissue macrophages control tissue innervation and homeostatic energy expenditure von Wolf, Yochai, Boura-Halfon, Sigalit, Cortese, Nina, Haimon, Zhana, Sar Shalom, Hadas, Kuperman, Yael, Kalchenko, Vyacheslav, Brandis, Alexander, David, Eyal, Segal-Hayoun, Yifat, Chappell-Maor, Louise, Yaron, Avraham, Jung, Steffen

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