A scaling normalization method for differential expression analysis of RNA-seq data von Robinson, Mark D, Oshlack, Alicia

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Fecal microbiota transplant from a rational stool donor improves hepatic encephalopathy: A randomized clinical trial von Bajaj, Jasmohan S., Kassam, Zain, Fagan, Andrew, Gavis, Edith A., Liu, Eric, Cox, I. Jane, Kheradman, Raffi, Heuman, Douglas, Wang, Jessica, Gurry, Thomas, Williams, Roger, Sikaroodi, Masoumeh, Fuchs, Michael, Alm, Eric, John, Binu, Thacker, Leroy R., Riva, Antonio, Smith, Mark, Taylor‐Robinson, Simon D., Gillevet, Patrick M

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Robustly detecting differential expression in RNA sequencing data using observation weights von Zhou, Xiaobei, Lindsay, Helen, Robinson, Mark D

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Comparison of clustering methods for high‐dimensional single‐cell flow and mass cytometry data von Weber, Lukas M., Robinson, Mark D.

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Risk factors for intrahepatic and extrahepatic cholangiocarcinoma: A systematic review and meta-analysis von Clements, Oliver, Eliahoo, Joseph, Kim, Jin Un, Taylor-Robinson, Simon D., Khan, Shahid A.

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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data von Robinson, Mark D., McCarthy, Davis J., Smyth, Gordon K.

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Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences von Soneson, Charlotte, Love, Michael I, Robinson, Mark D

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pipeComp, a general framework for the evaluation of computational pipelines, reveals performant single cell RNA-seq preprocessing tools von Germain, Pierre-Luc, Sonrel, Anthony, Robinson, Mark D.

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Treatment of a metabolic liver disease by in vivo genome base editing in adult mice von Villiger, Lukas, Grisch-Chan, Hiu Man, Lindsay, Helen, Ringnalda, Femke, Pogliano, Chiara B., Allegri, Gabriella, Fingerhut, Ralph, Häberle, Johannes, Matos, Joao, Robinson, Mark D., Thöny, Beat, Schwank, Gerald

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Experimental bacterial adaptation to the zebrafish gut reveals a primary role for immigration von Robinson, Catherine D, Klein, Helena S, Murphy, Kyleah D, Parthasarathy, Raghuveer, Guillemin, Karen, Bohannan, Brendan J M

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Organic materials for printed electronics von Berggren, M, Nilsson, D, Robinson, N. D

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Unified Method for Estimating the Ultimate Bearing Capacity of Shallow Foundations in Variably Saturated Soils under Steady Flow von Vahedifard, Farshid, Robinson, Joe D

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Eleven grand challenges in single-cell data science von Laehnemann, David, Koester, Johannes, Szczurek, Ewa, McCarthy, Davis J., Hicks, Stephanie C., Robinson, Mark D., Vallejos, Catalina A., Campbell, Kieran R., Beerenwinkel, Niko, Mahfouz, Ahmed, Pinello, Luca, Skums, Pavel, Stamatakis, Alexandros, Attolini, Camille Stephan-Otto, Aparicio, Samuel, Baaijens, Jasmijn, Balvert, Marleen, de Barbanson, Buys, Cappuccio, Antonio, Corleone, Giacomo, Dutilh, Bas E., Florescu, Maria, Guryev, Victor, Holmer, Rens, Jahn, Katharina, Lobo, Thamar Jessurun, Keizer, Emma M., Khatri, Indu, Kielbasa, Szymon M., Korbel, Jan O., Kozlov, Alexey M., Kuo, Tzu-Hao, Lelieveldt, Boudewijn P. F., Mandoiu, Ion I., Marioni, John C., Marschall, Tobias, Moelder, Felix, Niknejad, Amir, Raczkowski, Lukasz, Reinders, Marcel, de Ridder, Jeroen, Saliba, Antoine-Emmanuel, Somarakis, Antonios, Stegle, Oliver, Theis, Fabian J., Yang, Huan, Zelikovsky, Alex, McHardy, Alice C., Raphael, Benjamin J., Shah, Sohrab P., Schonhuth, Alexander

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A long-term Northern Hemisphere snow cover extent data record for climate studies and monitoring von Estilow, T. W, Young, A. H, Robinson, D. A

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Evolved Climates and Observational Discriminants for the TRAPPIST-1 Planetary System von Lincowski, Andrew P., Meadows, Victoria S., Crisp, David, Robinson, Tyler D., Luger, Rodrigo, Lustig-Yaeger, Jacob, Arney, Giada N.

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Count-based differential expression analysis of RNA sequencing data using R and Bioconductor von Anders, Simon, McCarthy, Davis J, Chen, Yunshun, Okoniewski, Michal, Smyth, Gordon K, Huber, Wolfgang, Robinson, Mark D

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Doublet identification in single-cell sequencing data using scDblFinder [version 1; peer review: 1 approved, 1 approved with reservations] von Germain, Pierre-Luc, Lun, Aaron, Macnair, Will, Robinson, Mark D

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Characterizing Earth Analogs in Reflected Light: Atmospheric Retrieval Studies for Future Space Telescopes von Feng, Y. Katherina, Robinson, Tyler D., Fortney, Jonathan J., Lupu, Roxana E., Marley, Mark S., Lewis, Nikole K., Macintosh, Bruce, Line, Michael R.

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NADPH oxidase-2 derived superoxide drives mitochondrial transfer from bone marrow stromal cells to leukemic blasts von Marlein, Christopher R., Zaitseva, Lyubov, Piddock, Rachel E., Robinson, Stephen D., Edwards, Dylan R., Shafat, Manar S., Zhou, Zhigang, Lawes, Matthew, Bowles, Kristian M., Rushworth, Stuart A.

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stageR: a general stage-wise method for controlling the gene-level false discovery rate in differential expression and differential transcript usage von Van den Berge, Koen, Soneson, Charlotte, Robinson, Mark D, Clement, Lieven

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