genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome von Sela, D.A, Chapman, J, Adeuya, A, Kim, J.H, Chen, F, Whitehead, T.R, Lapidus, A, Rokhsar, D.S, Lebrilla, C.B, German, J.B, Price, N.P, Richardson, P.M, Mills, D.A

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Molecular evidence of anteroposterior patterning in adult echinoderms von Formery, L., Peluso, P., Kohnle, I., Malnick, J., Thompson, J. R., Pitel, M., Uhlinger, K. R., Rokhsar, D. S., Rank, D. R., Lowe, C. J.

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The Spirodela polyrhiza genome reveals insights into its neotenous reduction fast growth and aquatic lifestyle von Wang, W., Haberer, G., Gundlach, H., Gläßer, C., Nussbaumer, T., Luo, M.C., Lomsadze, A., Borodovsky, M., Kerstetter, R.A., Shanklin, J., Byrant, D.W., Mockler, T.C., Appenroth, K.J., Grimwood, J., Jenkins, J., Chow, J., Choi, C., Adam, C., Cao, X.-H., Fuchs, J., Schubert, I., Rokhsar, D., Schmutz, J., Michael, T.P., Mayer, K.F.X., Messing, J

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A 34K SNP genotyping array for Populus trichocarpa: Design, application to the study of natural populations and transferability to other Populus species von Geraldes, A., DiFazio, S. P., Slavov, G. T., Ranjan, P., Muchero, W., Hannemann, J., Gunter, L. E., Wymore, A. M., Grassa, C. J., Farzaneh, N., Porth, I., McKown, A. D., Skyba, O., Li, E., Fujita, M., Klápště, J., Martin, J., Schackwitz, W., Pennacchio, C., Rokhsar, D., Friedmann, M. C., Wasteneys, G. O., Guy, R. D., El-Kassaby, Y. A., Mansfield, S. D., Cronk, Q. C. B., Ehlting, J., Douglas, C. J., Tuskan, G. A.

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Community structure and metabolism through reconstruction of microbial genomes from the environment von Banfield, Jillian F, Tyson, Gene W, Chapman, Jarrod, Hugenholtz, Philip, Allen, Eric E, Ram, Rachna J, Richardson, Paul M, Solovyev, Victor V, Rubin, Edward M, Rokhsar, Daniel S

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Genomic analysis of immunity in a Urochordate and the emergence of the vertebrate immune system: "waiting for Godot" von Azumi, Kaoru, De Santis, Rosaria, De Tomaso, Anthony, Rigoutsos, Isidore, Yoshizaki, Fumiko, Pinto, Maria Rosaria, Marino, Rita, Shida, Kazuhito, Ikeda, Makoto, Ikeda, Masami, Arai, Masafumi, Inoue, Yasuhito, Shimizu, Toshio, Satoh, Nori, Rokhsar, Daniel S, Du Pasquier, Louis, Kasahara, Masanori, Satake, Masanobu, Nonaka, Masaru

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Transcription factor binding site identification using the self-organizing map von Mahony, Shaun, Hendrix, David, Golden, Aaron, Smith, Terry J., Rokhsar, Daniel S.

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Pathways for protein folding: is a new view needed? von Pande, Vijay S, Grosberg, Alexander Yu, Tanaka, Toyoichi, Rokhsar, Daniel S

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Folding Pathway of a Lattice Model for Proteins von Pande, Vijay S., Rokhsar, Daniel S.

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Dynamic Processes Shape Spatiotemporal Properties of Retinal Waves von Feller, Marla B., Butts, Daniel A., Aaron, Holly L., Rokhsar, Daniel S., Shatz, Carla J.

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Mechanical Unfolding of a β-Hairpin Using Molecular Dynamics von Bryant, Zev, Pande, Vijay S., Rokhsar, Daniel S.

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Superconductivity and the quantum hard-core dimer gas von ROKHSAR, D. S, KIVELSON, S. A

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Solitons in chiral-spin liquids von ROKHSAR, D. S

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The Information Content of Spontaneous Retinal Waves von Butts, Daniel A, Rokhsar, Daniel S

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The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants von Banks, Jo Ann, Nishiyama, Tomoaki, Hasebe, Mitsuyasu, Bowman, John L., Gribskov, Michael, dePamphilis, Claude, Albert, Victor A., Aono, Naoki, Aoyama, Tsuyoshi, Ambrose, Barbara A., Ashton, Neil W., Axtell, Michael J., Barker, Elizabeth, Barker, Michael S., Bennetzen, Jeffrey L., Bonawitz, Nicholas D., Chapple, Clint, Cheng, Chaoyang, Correa, Luiz Gustavo Guedes, Dacre, Michael, DeBarry, Jeremy, Dreyer, Ingo, Elias, Marek, Engstrom, Eric M., Estelle, Mark, Feng, Liang, Floyd, Sandra K., Frommer, Wolf B., Fujita, Tomomichi, Gramzow, Lydia, Gutensohn, Michael, Harholt, Jesper, Hattori, Mitsuru, Heyl, Alexander, Hirai, Tadayoshi, Hiwatashi, Yuji, Ishikawa, Masaki, Iwata, Mineko, Karol, Kenneth G., Koehler, Barbara, Kolukisaoglu, Uener, Kubo, Minoru, Kurata, Tetsuya, Li, Kejie, Li, Ying, Litt, Amy, Lyons, Eric, Manning, Gerard, Maruyama, Takeshi, Michael, Todd P., Mikami, Koji, Miyazaki, Saori, Morinaga, Shin-ichi, Murata, Takashi, Mueller-Roeber, Bernd, Nelson, David R., Obara, Mari, Oguri, Yasuko, Olmstead, Richard G., Petersen, Bent Larsen, Pils, Birgit, Prigge, Michael, Rensing, Stefan A., Riaño-Pachón, Diego Mauricio, Roberts, Alison W., Sato, Yoshikatsu, Scheller, Henrik Vibe, Schulz, Burkhard, Schulz, Christian, Shakirov, Eugene V., Shibagaki, Nakako, Shinohara, Naoki, Shippen, Dorothy E., Sørensen, Iben, Sotooka, Ryo, Sugimoto, Nagisa, Sugita, Mamoru, Sumikawa, Naomi, Tanurdzic, Milos, Theißen, Günter, Ulvskov, Peter, Wakazuki, Sachiko, Weng, Jing-Ke, Willats, William W.G.T., Wipf, Daniel, Wolf, Paul G., Yang, Lixing, Zimmer, Andreas D., Zhu, Qihui, Mitros, Therese, Hellsten, Uffe, Loqué, Dominique, Otillar, Robert, Salamov, Asaf, Schmutz, Jeremy, Shapiro, Harris, Lindquist, Erika, Lucas, Susan, Rokhsar, Daniel, Grigoriev, Igor V.

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Retinal Waves Are Governed by Collective Network Properties von Butts, Daniel A, Feller, Marla B, Shatz, Carla J, Rokhsar, Daniel S

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Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion von Martinez, Diego, Challacombe, Jean, Morgenstern, Ingo, Hibbett, David, Schmoll, Monika, Kubicek, Christian P, Ferreira, Patricia, Ruiz-Duenas, Francisco J, Martinez, Angel T, Kersten, Phil, Hammel, Kenneth E, Vanden Wymelenberg, Amber, Gaskell, Jill, Lindquist, Erika, Sabat, Grzegorz, Splinter BonDurant, Sandra, Larrondo, Luis F, Canessa, Paulo, Vicuna, Rafael, Yadav, Jagjit, Doddapaneni, Harshavardhan, Subramanian, Venkataramanan, Pisabarro, Antonio G, Lavín, José L, Oguiza, José A, Master, Emma, Henrissat, Bernard, Coutinho, Pedro M, Harris, Paul, Magnuson, Jon Karl, Baker, Scott E, Bruno, Kenneth, Kenealy, William, Hoegger, Patrik J, Kües, Ursula, Ramaiya, Preethi, Lucas, Susan, Salamov, Asaf, Shapiro, Harris, Tu, Hank, Chee, Christine L, Misra, Monica, Xie, Gary, Teter, Sarah, Yaver, Debbie, James, Tim, Mokrejs, Martin, Pospisek, Martin, Grigoriev, Igor V, Brettin, Thomas, Rokhsar, Dan, Berka, Randy, Cullen, Dan

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Comparative genomics of the lactic acid bacteria von Makarova, K, Slesarev, A, Wolf, Y, Sorokin, A, Mirkin, B, Koonin, E, Pavlov, A, Pavlova, N, Karamychev, V, Polouchine, N

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Simple theory of exchange coupling in transition-metal magnetic multilayers von DEAVEN, D. M, ROKHSAR, D. S, JOHNSON, M

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Whole-Genome Shotgun Assembly and Analysis of the Genome of Fugu rubripes von Aparicio, Samuel, Chapman, Jarrod, Stupka, Elia, Putnam, Nik, Chia, Jer-ming, Dehal, Paramvir, Christoffels, Alan, Rash, Sam, Hoon, Shawn, Smit, Arian, Maarten D. Sollewijn Gelpke, Roach, Jared, Oh, Tania, Ho, Isaac Y., Wong, Marie, Detter, Chris, Verhoef, Frans, Predki, Paul, Tay, Alice, Lucas, Susan, Richardson, Paul, Smith, Sarah F., Clark, Melody S., Yvonne J. K. Edwards, Doggett, Norman, Zharkikh, Andrey, Tavtigian, Sean V., Pruss, Dmitry, Barnstead, Mary, Evans, Cheryl, Baden, Holly, Powell, Justin, Glusman, Gustavo, Rowen, Lee, Hood, Leroy, Tan, Y. H., Elgar, Greg, Hawkins, Trevor, Venkatesh, Byrappa, Rokhsar, Daniel, Brenner, Sydney

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