Sequencing-based methods and resources to study antimicrobial resistance von Boolchandani, Manish, D’Souza, Alaric W., Dantas, Gautam

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The rapid spread of carbapenem-resistant Enterobacteriaceae von Potter, Robert F, D’souza, Alaric W, Dantas, Gautam

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Cotrimoxazole Prophylaxis Increases Resistance Gene Prevalence and α-Diversity but Decreases β-Diversity in the Gut Microbiome of Human Immunodeficiency Virus–Exposed, Uninfected I... von D’Souza, Alaric W, Moodley-Govender, Eshia, Berla, Bertram, Kelkar, Tejas, Wang, Bin, Sun, Xiaoqing, Daniels, Brodie, Coutsoudis, Anna, Trehan, Indi, Dantas, Gautam

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Environmental remodeling of human gut microbiota and antibiotic resistome in livestock farms von Sun, Jian, Liao, Xiao-Ping, D’Souza, Alaric W., Boolchandani, Manish, Li, Sheng-Hui, Cheng, Ke, Luis Martínez, José, Li, Liang, Feng, You-Jun, Fang, Liang-Xing, Huang, Ting, Xia, Jing, Yu, Yang, Zhou, Yu-Feng, Sun, Yong-Xue, Deng, Xian-Bo, Zeng, Zhen-Ling, Jiang, Hong-Xia, Fang, Bing-Hu, Tang, You-Zhi, Lian, Xin-Lei, Zhang, Rong-Min, Fang, Zhi-Wei, Yan, Qiu-Long, Dantas, Gautam, Liu, Ya-Hong

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Spatiotemporal dynamics of multidrug resistant bacteria on intensive care unit surfaces von D’Souza, Alaric W., Potter, Robert F., Wallace, Meghan, Shupe, Angela, Patel, Sanket, Sun, Xiaoqing, Gul, Danish, Kwon, Jennie H., Andleeb, Saadia, Burnham, Carey-Ann D., Dantas, Gautam

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Acute and persistent effects of commonly used antibiotics on the gut microbiome and resistome in healthy adults von Anthony, Winston E., Wang, Bin, Sukhum, Kimberley V., D’Souza, Alaric W., Hink, Tiffany, Cass, Candice, Seiler, Sondra, Reske, Kimberly A., Coon, Christopher, Dubberke, Erik R., Burnham, Carey-Ann D., Dantas, Gautam, Kwon, Jennie H.

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Manure Microbial Communities and Resistance Profiles Reconfigure after Transition to Manure Pits and Differ from Those in Fertilized Field Soil von Sukhum, Kimberley V, Vargas, Rhiannon C, Boolchandani, Manish, D'Souza, Alaric W, Patel, Sanket, Kesaraju, Akhil, Walljasper, Gretchen, Hegde, Harshad, Ye, Zhan, Valenzuela, Robert K, Gunderson, Paul, Bendixsen, Casper, Dantas, Gautam, Shukla, Sanjay K

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Phenotypic and genotypic characterization of linezolid-resistant Enterococcus faecium from the USA and Pakistan von Wardenburg, Kate E, Potter, Robert F, D’Souza, Alaric W, Hussain, Tahir, Wallace, Meghan A, Andleeb, Saadia, Burnham, Carey-Ann D, Dantas, Gautam

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Destination shapes antibiotic resistance gene acquisitions, abundance increases, and diversity changes in Dutch travelers von D'Souza, Alaric W, Boolchandani, Manish, Patel, Sanket, Galazzo, Gianluca, van Hattem, Jarne M, Arcilla, Maris S, Melles, Damian C, de Jong, Menno D, Schultsz, Constance, Dantas, Gautam, Penders, John

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Genomic Characterization of Antibiotic Resistant Escherichia coli Isolated From Domestic Chickens in Pakistan von Rafique, Muhammad, Potter, Robert F, Ferreiro, Aura, Wallace, Meghan A, Rahim, Abdul, Ali Malik, Akbar, Siddique, Naila, Abbas, Muhammad Athar, D'Souza, Alaric W, Burnham, Carey-Ann D, Ali, Naeem, Dantas, Gautam

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Infant diet and maternal gestational weight gain predict early metabolic maturation of gut microbiomes von Baumann-Dudenhoeffer, Aimee M., D’Souza, Alaric W., Tarr, Phillip I., Warner, Barbara B., Dantas, Gautam

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Structural and molecular rationale for the diversification of resistance mediated by the Antibiotic_NAT family von Stogios, Peter J., Bordeleau, Emily, Xu, Zhiyu, Skarina, Tatiana, Evdokimova, Elena, Chou, Sommer, Diorio-Toth, Luke, D’Souza, Alaric W., Patel, Sanket, Dantas, Gautam, Wright, Gerard D., Savchenko, Alexei

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Daily occupational exposure in swine farm alters human skin microbiota and antibiotic resistome von Chen, Dong‐Rui, Cheng, Ke, Wan, Lei, Cui, Chao‐Yue, Li, Gong, Zhao, Dong‐Hao, Yu, Yang, Liao, Xiao‐Ping, Liu, Ya‐Hong, D'Souza, Alaric W., Lian, Xin‐Lei, Sun, Jian

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Superficieibacter electus gen. nov., sp. nov., an Extended-Spectrum β-Lactamase Possessing Member of the Enterobacteriaceae Family, Isolated From Intensive Care Unit Surfaces von Potter, Robert F, D'Souza, Alaric W, Wallace, Meghan A, Shupe, Angela, Patel, Sanket, Gul, Danish, Kwon, Jennie H, Beatty, Wandy, Andleeb, Saadia, Burnham, Carey-Ann D, Dantas, Gautam

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Breakpoint beware: reliance on historical breakpoints for Enterobacteriaceae leads to discrepancies in interpretation of susceptibility testing for carbapenems and cephalosporins a... von Yarbrough, Melanie L., Wallace, Meghan A., Potter, Robert F., D’Souza, Alaric W., Dantas, Gautam, Burnham, Carey-Ann D.

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Malignant cancer and invasive placentation: A case for positive pleiotropy between endometrial and malignancy phenotypes von D'Souza, Alaric W, Wagner, Günter P

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Draft Genome Sequence of the blaOXA-436- and blaNDM-1-Harboring Shewanella putrefaciens SA70 Isolate von Potter, Robert F, D'Souza, Alaric W, Wallace, Meghan A, Shupe, Angela, Patel, Sanket, Gul, Danish, Kwon, Jennie H, Andleeb, Saadia, Burnham, C A, Dantas, Gautam

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Draft Genome Sequence of the bla OXA-436 - and bla NDM-1 -Harboring Shewanella putrefaciens SA70 Isolate von Potter, Robert F, D'Souza, Alaric W, Wallace, Meghan A, Shupe, Angela, Patel, Sanket, Gul, Danish, Kwon, Jennie H, Andleeb, Saadia, Burnham, C A, Dantas, Gautam

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Diet and Maternal Gestational Weight Gain Predict Metabolic Maturation of Infant Gut Microbiomes von Baumann-Dudenhoeffer, Aimee M., D’Souza, Alaric W., Tarr, Phillip I., Warner, Barbara B., Dantas, Gautam

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Additional file 2 of Destination shapes antibiotic resistance gene acquisitions, abundance increases, and diversity changes in Dutch travelers von D’Souza, Alaric W., Boolchandani, Manish, Patel, Sanket, Galazzo, Gianluca, van Hattem, Jarne M., Arcilla, Maris S., Melles, Damian C., de Jong, Menno D., Schultsz, Constance, Dantas, Gautam, Penders, John

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