Targeted Discovery of Glycoside Hydrolases from a Switchgrass-Adapted Compost Community von Allgaier, Martin, Reddy, Amitha, Park, Joshua I, Ivanova, Natalia, D'haeseleer, Patrik, Lowry, Steve, Sapra, Rajat, Hazen, Terry C, Simmons, Blake A, VanderGheynst, Jean S, Hugenholtz, Philip

Volltext

Genetic network inference: from co-expression clustering to reverse engineering von D’haeseleer, Patrik, Liang, Shoudan, Somogyi, Roland

Volltext

Identification of Biofilm Matrix-Associated Proteins from an Acid Mine Drainage Microbial Community von YONGQIN JIAO, D'HAESELEER, Patrik, DILL, Brian D, SHAH, Manesh, VERBERKMOES, Nathan C, HETTICH, Robert L, BANFIELD, Jillian F, THELEN, Michael P

Volltext

How does gene expression clustering work? von D'haeseleer, Patrik

Volltext

Proteogenomic analysis of a thermophilic bacterial consortium adapted to deconstruct switchgrass von D'haeseleer, Patrik, Gladden, John M, Allgaier, Martin, Chain, Patrik S G, Tringe, Susannah G, Malfatti, Stephanie A, Aldrich, Joshua T, Nicora, Carrie D, Robinson, Errol W, Paša-Tolić, Ljiljana, Hugenholtz, Philip, Simmons, Blake A, Singer, Steven W

Volltext

Proteomic Profiling of Burkholderia thailandensis During Host Infection Using Bio-Orthogonal Noncanonical Amino Acid Tagging (BONCAT) von Franco, Magdalena, D'haeseleer, Patrik M, Branda, Steven S, Liou, Megan J, Haider, Yasmeen, Segelke, Brent W, El-Etr, Sahar H

Volltext

Rapid countermeasure discovery against Francisella tularensis based on a metabolic network reconstruction von Chaudhury, Sidhartha, Abdulhameed, Mohamed Diwan M, Singh, Narender, Tawa, Gregory J, D'haeseleer, Patrik M, Zemla, Adam T, Navid, Ali, Zhou, Carol E, Franklin, Matthew C, Cheung, Jonah, Rudolph, Michael J, Love, James, Graf, John F, Rozak, David A, Dankmeyer, Jennifer L, Amemiya, Kei, Daefler, Simon, Wallqvist, Anders

Volltext

A thermophilic ionic liquid-tolerant cellulase cocktail for the production of cellulosic biofuels von Park, Joshua I, Steen, Eric J, Burd, Helcio, Evans, Sophia S, Redding-Johnson, Alyssa M, Batth, Tanveer, Benke, Peter I, D'haeseleer, Patrik, Sun, Ning, Sale, Kenneth L, Keasling, Jay D, Lee, Taek Soon, Petzold, Christopher J, Mukhopadhyay, Aindrila, Singer, Steven W, Simmons, Blake A, Gladden, John M

Volltext

What are DNA sequence motifs? von D'haeseleer, Patrik

Volltext

Automated modelling of signal transduction networks von Steffen, Martin, Petti, Allegra, Aach, John, D'haeseleer, Patrik, Church, George

Volltext

Phylogenomically Guided Identification of Industrially Relevant GH1 β‑Glucosidases through DNA Synthesis and Nanostructure-Initiator Mass Spectrometry von Heins, Richard A, Cheng, Xiaoliang, Nath, Sangeeta, Deng, Kai, Bowen, Benjamin P, Chivian, Dylan C, Datta, Supratim, Friedland, Gregory D, D’Haeseleer, Patrik, Wu, Dongying, Tran-Gyamfi, Mary, Scullin, Chessa S, Singh, Seema, Shi, Weibing, Hamilton, Matthew G, Bendall, Matthew L, Sczyrba, Alexander, Thompson, John, Feldman, Taya, Guenther, Joel M, Gladden, John M, Cheng, Jan-Fang, Adams, Paul D, Rubin, Edward M, Simmons, Blake A, Sale, Kenneth L, Northen, Trent R, Deutsch, Samuel

Volltext

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea von Eisen, Jonathan A, Wu, Dongying, Hugenholtz, Philip, Mavromatis, Konstantinos, Pukall, Rüdiger, Dalin, Eileen, Ivanova, Natalia N, Kunin, Victor, Goodwin, Lynne, Wu, Martin, Tindall, Brian J, Hooper, Sean D, Pati, Amrita, Lykidis, Athanasios, Spring, Stefan, Anderson, Iain J, D'haeseleer, Patrik, Zemla, Adam, Singer, Mitchell, Lapidus, Alla, Nolan, Matt, Copeland, Alex, Han, Cliff, Chen, Feng, Cheng, Jan-Fang, Lucas, Susan, Kerfeld, Cheryl, Lang, Elke, Gronow, Sabine, Chain, Patrick, Bruce, David, Rubin, Edward M, Kyrpides, Nikos C, Klenk, Hans-Peter

Volltext

The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes von Seaver, Samuel M D, Liu, Filipe, Zhang, Qizhi, Jeffryes, James, Faria, José P, Edirisinghe, Janaka N, Mundy, Michael, Chia, Nicholas, Noor, Elad, Beber, Moritz E, Best, Aaron A, DeJongh, Matthew, Kimbrel, Jeffrey A, D’haeseleer, Patrik, McCorkle, Sean R, Bolton, Jay R, Pearson, Erik, Canon, Shane, Wood-Charlson, Elisha M, Cottingham, Robert W, Arkin, Adam P, Henry, Christopher S

Volltext

Deep-Sea Oil Plume Enriches Indigenous Oil-Degrading Bacteria von Hazen, Terry C., Dubinsky, Eric A., DeSantis, Todd Z., Andersen, Gary L., Piceno, Yvette M., Singh, Navjeet, Jansson, Janet K., Probst, Alexander, Borglin, Sharon E., Fortney, Julian L., Stringfellow, William T., Bill, Markus, Conrad, Mark E., Tom, Lauren M., Chavarria, Krystle L., Alusi, Thana R., Lamendella, Regina, Joyner, Dominique C., Spier, Chelsea, Baelum, Jacob, Auer, Manfred, Zemla, Mardn L., Chakraborty, Romy, Sonnenthal, Eric L., D'haeseleer, Patrik, Holman, Hoi-Ying N., Osman, Shariff, Lu, Zhenmei, Van Nostrand, Joy D., Deng, Ye, Zhou, Jizhong, Mason, Olivia U.

Volltext

Discovery of microorganisms and enzymes involved in high-solids decomposition of rice straw using metagenomic analyses von Reddy, Amitha P, Simmons, Christopher W, D'haeseleer, Patrik, Khudyakov, Jane, Burd, Helcio, Hadi, Masood, Simmons, Blake A, Singer, Steven W, Thelen, Michael P, Vandergheynst, Jean S

Volltext

Combining multiple functional annotation tools increases coverage of metabolic annotation von Griesemer, Marc, Kimbrel, Jeffrey A, Zhou, Carol E, Navid, Ali, D'haeseleer, Patrik

Volltext

Sequence, structure prediction, and epitope analysis of the polymorphic membrane protein family in Chlamydia trachomatis von Cervantes, Patrick W, Segelke, Brent W, Lau, Edmond Y, Robinson, Beverly V, Abisoye-Ogunniyan, Abisola, Pal, Sukumar, de la Maza, Luis M, Coleman, Matthew A, D'haeseleer, Patrik

Volltext

How does DNA sequence motif discovery work? von D'haeseleer, Patrik

Volltext

Global transcriptome response to ionic liquid by a tropical rain forest soil bacterium, Enterobacter lignolyticus von Khudyakov, Jane I, D’haeseleer, Patrik, Borglin, Sharon E, DeAngelis, Kristen M, Woo, Hannah, Lindquist, Erika A, Hazen, Terry C, Simmons, Blake A, Thelen, Michael P

Volltext

Bacterial exometabolites influence Chlamydomonas cell cycle and double algal productivity von Windler, Miriam, Stuart, Rhona, Deutzmann, Joerg S, Mayali, Xavier, Navid, Ali, D'haeseleer, Patrik, Marcu, Oana E, Lipton, Mary, Nicora, Carrie, Spormann, Alfred M

Volltext