Evolution and Functional Diversification of MIRNA Genes von Cuperus, Josh T., Fahlgren, Noah, Carrington, James C.

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Dynamics of Gene Expression in Single Root Cells of Arabidopsis thaliana von Jean-Baptiste, Ken, McFaline-Figueroa, José L., Alexandre, Cristina M., Dorrity, Michael W., Saunders, Lauren, Bubb, Kerry L., Trapnell, Cole, Fields, Stanley, Queitsch, Christine, Cuperus, Josh T.

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Deep learning of the regulatory grammar of yeast 5' untranslated regions from 500,000 random sequences von Cuperus, Josh T, Groves, Benjamin, Kuchina, Anna, Rosenberg, Alexander B, Jojic, Nebojsa, Fields, Stanley, Seelig, Georg

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The regulatory landscape of Arabidopsis thaliana roots at single-cell resolution von Dorrity, Michael W., Alexandre, Cristina M., Hamm, Morgan O., Vigil, Anna-Lena, Fields, Stanley, Queitsch, Christine, Cuperus, Josh T.

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New Generation of Artificial MicroRNA and Synthetic Trans-Acting Small Interfering RNA Vectors for Efficient Gene Silencing in Arabidopsis von Carbonell, Alberto, Takeda, Atsushi, Fahlgren, Noah, Johnson, Simon C., Cuperus, Josh T., Carrington, James C.

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Functional Analysis of Three Arabidopsis ARGONAUTES Using Slicer-Defective Mutants von Carbonell, Alberto, Fahlgren, Noah, Garcia-Ruiz, Hernan, Gilbert, Kerrigan B., Montgomery, Taiowa A., Nguyen, Tammy, Cuperus, Josh T., Carrington, James C.

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Unique functionality of 22-nt miRNAs in triggering RDR6-dependent siRNA biogenesis from target transcripts in Arabidopsis von Cuperus, Josh T, Carbonell, Alberto, Fahlgren, Noah, Garcia-Ruiz, Hernan, Burke, Russell T, Takeda, Atsushi, Sullivan, Christopher M, Gilbert, Sunny D, Montgomery, Taiowa A, Carrington, James C

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Specificity of ARGONAUTE7-miR390 Interaction and Dual Functionality in TAS3 Trans-Acting siRNA Formation von Montgomery, Taiowa A., Howell, Miya D., Cuperus, Josh T., Li, Dawei, Hansen, Jesse E., Alexander, Amanda L., Chapman, Elisabeth J., Fahlgren, Noah, Allen, Edwards, Carrington, James C.

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Arabidopsis and maize terminator strength is determined by GC content, polyadenylation motifs and cleavage probability von Gorjifard, Sayeh, Jores, Tobias, Tonnies, Jackson, Mueth, Nicholas A., Bubb, Kerry, Wrightsman, Travis, Buckler, Edward S., Fields, Stanley, Cuperus, Josh T., Queitsch, Christine

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Effects of sequence motifs in the yeast 3' untranslated region determined from massively parallel assays of random sequences von Savinov, Andrew, Brandsen, Benjamin M, Angell, Brooke E, Cuperus, Josh T, Fields, Stanley

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Single-cell genomics in plants: current state, future directions, and hurdles to overcome von Cuperus, Josh T

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Identification of MIR390a precursor processing-defective mutants in Arabidopsis by direct genome sequencing von Cuperus, Josh T, Montgomery, Taiowa A, Fahlgren, Noah, Burke, Russell T, Townsend, Tiffany, Sullivan, Christopher M, Carrington, James C

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Phytophthora Have Distinct Endogenous Small RNA Populations That Include Short Interfering and microRNAs von Fahlgren, Noah, Bollmann, Stephanie R, Kasschau, Kristin D, Cuperus, Josh T, Press, Caroline M, Sullivan, Christopher M, Chapman, Elisabeth J, Hoyer, J. Steen, Gilbert, Kerrigan B, Grünwald, Niklaus J, Carrington, James C, Margis, Rogerio

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Ribosomal DNA replication time coordinates completion of genome replication and anaphase in yeast von Kwan, Elizabeth X., Alvino, Gina M., Lynch, Kelsey L., Levan, Paula F., Amemiya, Haley M., Wang, Xiaobin S., Johnson, Sarah A., Sanchez, Joseph C., Miller, Madison A., Croy, Mackenzie, Lee, Seung-been, Naushab, Maria, Bedalov, Antonio, Cuperus, Josh T., Brewer, Bonita J., Queitsch, Christine, Raghuraman, M.K.

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Identification of Plant Enhancers and Their Constituent Elements by STARR-seq in Tobacco Leaves[OPEN] von Jores, Tobias, Tonnies, Jackson, Dorrity, Michael W., Cuperus, Josh T., Fields, Stanley, Queitsch, Christine

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Frontiers and techniques in plant gene regulation von Jores, Tobias, Hamm, Morgan, Cuperus, Josh T., Queitsch, Christine

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A single-cell view of the transcriptome during lateral root initiation in Arabidopsis thaliana von Gala, Hardik P, Lanctot, Amy, Jean-Baptiste, Ken, Guiziou, Sarah, Chu, Jonah C, Zemke, Joseph E, George, Wesley, Queitsch, Christine, Cuperus, Josh T, Nemhauser, Jennifer L

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Impact on splicing in Saccharomyces cerevisiae of random 50-base sequences inserted into an intron von Perchlik, Molly, Sasse, Alexander, Mostafavi, Sara, Fields, Stanley, Cuperus, Josh T

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Substantial rDNA copy number reductions alter timing of development and produce variable tissue-specific phenotypes in C. elegans von Morton, Elizabeth A, Hall, Ashley N, Cuperus, Josh T, Queitsch, Christine

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Synthetic promoter designs enabled by a comprehensive analysis of plant core promoters von Jores, Tobias, Tonnies, Jackson, Wrightsman, Travis, Buckler, Edward S., Cuperus, Josh T., Fields, Stanley, Queitsch, Christine

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