Predictability of human differential gene expression von Crow, Megan, Lim, Nathaniel, Ballouz, Sara, Pavlidis, Paul, Gillis, Jesse

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Transcriptional Architecture of Synaptic Communication Delineates GABAergic Neuron Identity von Paul, Anirban, Crow, Megan, Raudales, Ricardo, He, Miao, Gillis, Jesse, Huang, Z. Josh

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Characterizing the replicability of cell types defined by single cell RNA-sequencing data using MetaNeighbor von Crow, Megan, Paul, Anirban, Ballouz, Sara, Huang, Z. Josh, Gillis, Jesse

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Persistent Alterations in Microglial Enhancers in a Model of Chronic Pain von Denk, Franziska, Crow, Megan, Didangelos, Athanasios, Lopes, Douglas M., McMahon, Stephen B.

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HDAC inhibitors attenuate the development of hypersensitivity in models of neuropathic pain von Denk, Franziska, Huang, Wenlong, Sidders, Ben, Bithell, Angela, Crow, Megan, Grist, John, Sharma, Simone, Ziemek, Daniel, Rice, Andrew S.C., Buckley, Noel J., McMahon, Stephen B.

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The transcriptional legacy of developmental stochasticity von Ballouz, Sara, Kawaguchi, Risa Karakida, Pena, Maria T., Fischer, Stephan, Crow, Megan, French, Leon, Knight, Frank M., Adams, Linda B., Gillis, Jesse

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Whole genome sequencing across clinical trials identifies rare coding variants in GPR68 associated with chemotherapy-induced peripheral neuropathy von Khan, Zia, Jung, Min, Crow, Megan, Mohindra, Rajat, Maiya, Vidya, Kaminker, Joshua S, Hackos, David H, Chandler, G Scott, McCarthy, Mark I, Bhangale, Tushar

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Co-expression in Single-Cell Analysis: Saving Grace or Original Sin? von Crow, Megan, Gillis, Jesse

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Single cell RNA-sequencing: replicability of cell types von Crow, Megan, Gillis, Jesse

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Pandemics and Precarious Work: Translating Research to Practice for Marginalized Workers von Cubrich, Marc, Tengesdal, Joren A., Ugueto-Rey, Gustavo, Stahl, Rachael, Crow Brauer, Megan

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RNA-seq data in pain research–an illustrated guide von Crow, Megan, Denk, Franziska

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Coexpression reveals conserved gene programs that co-vary with cell type across kingdoms von Crow, Megan, Suresh, Hamsini, Lee, John, Gillis, Jesse

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Scaling up reproducible research for single-cell transcriptomics using MetaNeighbor von Fischer, Stephan, Crow, Megan, Harris, Benjamin D., Gillis, Jesse

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CoCoCoNet: conserved and comparative co-expression across a diverse set of species von Lee, John, Shah, Manthan, Ballouz, Sara, Crow, Megan, Gillis, Jesse

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CoCoCoNet: conserved and comparative co-expression across a diverse set of species von Lee, John, Shah, Manthan, Ballouz, Sara, Crow, Megan, Gillis, Jesse

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Single-cell RNA sequencing of developing maize ears facilitates functional analysis and trait candidate gene discovery von Xu, Xiaosa, Crow, Megan, Rice, Brian R., Li, Forrest, Harris, Benjamin, Liu, Lei, Demesa-Arevalo, Edgar, Lu, Zefu, Wang, Liya, Fox, Nathan, Wang, Xiaofei, Drenkow, Jorg, Luo, Anding, Char, Si Nian, Yang, Bing, Sylvester, Anne W., Gingeras, Thomas R., Schmitz, Robert J., Ware, Doreen, Lipka, Alexander E., Gillis, Jesse, Jackson, David

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Exploiting single-cell expression to characterize co-expression replicability von Crow, Megan, Paul, Anirban, Ballouz, Sara, Huang, Z Josh, Gillis, Jesse

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Comparative cellular analysis of motor cortex in human, marmoset and mouse von Bakken, Trygve E., Jorstad, Nikolas L., Hu, Qiwen, Lake, Blue B., Tian, Wei, Kalmbach, Brian E., Crow, Megan, Hodge, Rebecca D., Krienen, Fenna M., Sorensen, Staci A., Eggermont, Jeroen, Yao, Zizhen, Aevermann, Brian D., Aldridge, Andrew I., Bartlett, Anna, Bertagnolli, Darren, Casper, Tamara, Crichton, Kirsten, Daigle, Tanya L., Dalley, Rachel, Dembrow, Nikolai, Diep, Dinh, Ding, Song-Lin, Fang, Rongxin, Fischer, Stephan, Goldman, Melissa, Goldy, Jeff, Graybuck, Lucas T., Herb, Brian R., Hou, Xiaomeng, Kancherla, Jayaram, Kroll, Matthew, Lathia, Kanan, Li, Yang Eric, Liu, Christine S., Lucero, Jacinta D., Mahurkar, Anup, McMillen, Delissa, Miller, Jeremy A., Moussa, Marmar, Nery, Joseph R., Nicovich, Philip R., Niu, Sheng-Yong, Orvis, Joshua, Osteen, Julia K., Owen, Scott, Palmer, Carter R., Pham, Thanh, Plongthongkum, Nongluk, Poirion, Olivier, Reed, Nora M., Rimorin, Christine, Rivkin, Angeline, Romanow, William J., Sedeño-Cortés, Adriana E., Siletti, Kimberly, Somasundaram, Saroja, Sulc, Josef, Tieu, Michael, Torkelson, Amy, Tung, Herman, Wang, Xinxin, Xie, Fangming, Yanny, Anna Marie, Zhang, Renee, Ament, Seth A., Behrens, M. Margarita, Bravo, Hector Corrada, Chun, Jerold, Dobin, Alexander, Gillis, Jesse, Hertzano, Ronna, Hof, Patrick R., Höllt, Thomas, Horwitz, Gregory D., Keene, C. Dirk, Kharchenko, Peter V., Lelieveldt, Boudewijn P., Luo, Chongyuan, Mukamel, Eran A., Pinto-Duarte, António, Preissl, Sebastian, Regev, Aviv, Ren, Bing, Scheuermann, Richard H., Smith, Kimberly, Spain, William J., White, Owen R., Koch, Christof, Hawrylycz, Michael, Tasic, Bosiljka, Macosko, Evan Z., McCarroll, Steven A., Ting, Jonathan T., Zeng, Hongkui, Zhang, Kun, Feng, Guoping, Ecker, Joseph R., Linnarsson, Sten, Lein, Ed S.

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A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex von Yao, Zizhen, Liu, Hanqing, Xie, Fangming, Fischer, Stephan, Adkins, Ricky S., Aldridge, Andrew I., Ament, Seth A., Bartlett, Anna, Behrens, M. Margarita, Van den Berge, Koen, Bertagnolli, Darren, de Bézieux, Hector Roux, Biancalani, Tommaso, Booeshaghi, A. Sina, Bravo, Héctor Corrada, Casper, Tamara, Colantuoni, Carlo, Crabtree, Jonathan, Creasy, Heather, Crichton, Kirsten, Crow, Megan, Dee, Nick, Dougherty, Elizabeth L., Doyle, Wayne I., Dudoit, Sandrine, Fang, Rongxin, Felix, Victor, Fong, Olivia, Giglio, Michelle, Goldy, Jeff, Hawrylycz, Mike, Herb, Brian R., Hertzano, Ronna, Hou, Xiaomeng, Hu, Qiwen, Kancherla, Jayaram, Kroll, Matthew, Lathia, Kanan, Li, Yang Eric, Lucero, Jacinta D., Luo, Chongyuan, Mahurkar, Anup, McMillen, Delissa, Nadaf, Naeem M., Nery, Joseph R., Nguyen, Thuc Nghi, Niu, Sheng-Yong, Ntranos, Vasilis, Orvis, Joshua, Osteen, Julia K., Pham, Thanh, Pinto-Duarte, Antonio, Poirion, Olivier, Preissl, Sebastian, Purdom, Elizabeth, Rimorin, Christine, Risso, Davide, Rivkin, Angeline C., Smith, Kimberly, Street, Kelly, Sulc, Josef, Svensson, Valentine, Tieu, Michael, Torkelson, Amy, Tung, Herman, Vaishnav, Eeshit Dhaval, Vanderburg, Charles R., van Velthoven, Cindy, Wang, Xinxin, White, Owen R., Huang, Z. Josh, Kharchenko, Peter V., Pachter, Lior, Ngai, John, Regev, Aviv, Tasic, Bosiljka, Welch, Joshua D., Gillis, Jesse, Macosko, Evan Z., Ren, Bing, Ecker, Joseph R., Zeng, Hongkui, Mukamel, Eran A.

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Single-cell transcriptomics of the developing lateral geniculate nucleus reveals insights into circuit assembly and refinement von Kalish, Brian T., Cheadle, Lucas, Hrvatin, Sinisa, Nagy, M. Aurel, Rivera, Samuel, Crow, Megan, Gillis, Jesse, Kirchner, Rory, Greenberg, Michael E.

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