Stacks: an analysis tool set for population genomics von Catchen, Julian, Hohenlohe, Paul A., Bassham, Susan, Amores, Angel, Cresko, William A.

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Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags von Hohenlohe, Paul A, Bassham, Susan, Etter, Paul D, Stiffler, Nicholas, Johnson, Eric A, Cresko, William A

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Rapid SNP discovery and genetic mapping using sequenced RAD markers von Baird, Nathan A, Etter, Paul D, Atwood, Tressa S, Currey, Mark C, Shiver, Anthony L, Lewis, Zachary A, Selker, Eric U, Cresko, William A, Johnson, Eric A

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Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes von Hohenlohe, Paul A., Bassham, Susan, Currey, Mark, Cresko, William A.

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Local de novo assembly of RAD paired-end contigs using short sequencing reads von Etter, Paul D, Preston, Jessica L, Bassham, Susan, Cresko, William A, Johnson, Eric A

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Evolution of stickleback in 50 years on earthquake-uplifted islands von Lescak, Emily A., Bassham, Susan L., Catchen, Julian, Gelmond, Ofer, Sherbick, Mary L., von Hippel, Frank A., Cresko, William A.

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SNP Discovery and Genotyping for Evolutionary Genetics Using RAD Sequencing von Etter, Paul D., Bassham, Susan, Hohenlohe, Paul A., Johnson, Eric A., Cresko, William A.

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Resolving postglacial phylogeography using high-throughput sequencing von Emerson, Kevin J., Merz, Clayton R., Catchen, Julian M., Hohenlohe, Paul A., Cresko, William A., Bradshaw, William E., Holzapfel, Christina M.

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Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers von Miller, Michael R, Dunham, Joseph P, Amores, Angel, Cresko, William A, Johnson, Eric A

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Repeated Selection of Alternatively Adapted Haplotypes Creates Sweeping Genomic Remodeling in Stickleback von Bassham, Susan, Catchen, Julian, Lescak, Emily, von Hippel, Frank A, Cresko, William A

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Ancient genomic variation underlies repeated ecological adaptation in young stickleback populations von Nelson, Thomas C., Cresko, William A.

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Extreme intraspecific divergence in mitochondrial haplotypes makes the threespine stickleback fish an emerging evolutionary mutant model for mito-nuclear interactions von Beck, Emily A, Bassham, Susan, Cresko, William A

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A highly contiguous nuclear genome assembly of the mandarinfish Synchiropus splendidus (Syngnathiformes: Callionymidae) von Stervander, Martin, Cresko, William A

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Genome‐wide single nucleotide polymorphism markers reveal population structure and dispersal direction of an expanding nuisance algal bloom species von Rengefors, Karin, Gollnisch, Raphael, Sassenhagen, Ingrid, Härnström Aloisi, Karolina, Svensson, Marie, Lebret, Karen, Čertnerová, Dora, Cresko, William A., Bassham, Susan, Ahrén, Dag

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A Few Stickleback Suffice for the Transport of Alleles to New Lakes von Galloway, Jared, Cresko, William A., Ralph, Peter

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Shared Environment and Genetics Shape the Gut Microbiome after Infant Adoption von Tavalire, Hannah F., Christie, Diana M., Leve, Leslie D., Ting, Nelson, Cresko, William A., Bohannan, Brendan J. M.

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Host genomic variation shapes gut microbiome diversity in threespine stickleback fish von Small, Clayton M, Beck, Emily A, Currey, Mark C, Tavalire, Hannah F, Bassham, Susan, Cresko, William A

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Ovarian transcriptional response to Wolbachia infection in D. melanogaster in the context of between-genotype variation in gene expression von Frantz, Sophia I, Small, Clayton M, Cresko, William A, Singh, Nadia D

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Population Genomic Analysis of Model and Nonmodel Organisms Using Sequenced RAD Tags von Hohenlohe, Paul A., Catchen, Julian, Cresko, William A.

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Innate immune responses to gut microbiota differ between oceanic and freshwater threespine stickleback populations von Milligan-McClellan, Kathryn, Small, Clayton M, Mittge, Erika K, Agarwal, Meghna, Currey, Mark, Cresko, William A, Guillemin, Karen

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