PhaMMseqs: a new pipeline for constructing phage gene phamilies using MMseqs2 von Gauthier, Christian H, Cresawn, Steven G, Hatfull, Graham F

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pdm_utils: a SEA-PHAGES MySQL phage database management toolkit von Mavrich, Travis N, Gauthier, Christian, Abad, Lawrence, Bowman, Charles A, Cresawn, Steven G, Hatfull, Graham F

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Phamerator: a bioinformatic tool for comparative bacteriophage genomics von Cresawn, Steven G, Bogel, Matt, Day, Nathan, Jacobs-Sera, Deborah, Hendrix, Roger W, Hatfull, Graham F

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Teaching Scientific Inquiry von Hanauer, David I., Jacobs-Sera, Deborah, Pedulla, Marisa L., Cresawn, Steven G., Hendrix, Roger W., Hatfull, Graham F.

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Genomic characterization of six novel Bacillus pumilus bacteriophages von Lorenz, Laura, Lins, Bridget, Barrett, Jonathan, Montgomery, Andrew, Trapani, Stephanie, Schindler, Anne, Christie, Gail E, Cresawn, Steven G, Temple, Louise

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Comparative genomics of the mycobacteriophages: insights into bacteriophage evolution von Hatfull, Graham F., Cresawn, Steven G., Hendrix, Roger W.

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Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity von Pope, Welkin H, Bowman, Charles A, Russell, Daniel A, Jacobs-Sera, Deborah, Asai, David J, Cresawn, Steven G, Jacobs, William R, Hendrix, Roger W, Lawrence, Jeffrey G, Hatfull, Graham F

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Genomic diversity of bacteriophages infecting Rhodobacter capsulatus and their relatedness to its gene transfer agent RcGTA von Rapala, Jackson, Miller, Brenda, Garcia, Maximiliano, Dolan, Megan, Bockman, Matthew, Hansson, Mats, Russell, Daniel A, Garlena, Rebecca A, Cresawn, Steven G, Westbye, Alexander B, Beatty, J Thomas, Alvey, Richard M, Bollivar, David W

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An inclusive Research Education Community (iREC): Impact of the SEA-PHAGES program on research outcomes and student learning von Hanauer, David I., Graham, Mark J., SEA-PHAGES, Betancur, Laura, Bobrownicki, Aiyana, Cresawn, Steven G., Garlena, Rebecca A., Jacobs-Sera, Deborah, Kaufmann, Nancy, Pope, Welkin H., Russell, Daniel A., Jacobs, William R., Sivanathan, Viknesh, Asai, David J., Hatfull, Graham F.

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A broadly implementable research course in phage discovery and genomics for first-year undergraduate students von Jordan, Tuajuanda C, Burnett, Sandra H, Carson, Susan, Caruso, Steven M, Clase, Kari, DeJong, Randall J, Dennehy, John J, Denver, Dee R, Dunbar, David, Elgin, Sarah C R, Findley, Ann M, Gissendanner, Chris R, Golebiewska, Urszula P, Guild, Nancy, Hartzog, Grant A, Grillo, Wendy H, Hollowell, Gail P, Hughes, Lee E, Johnson, Allison, King, Rodney A, Lewis, Lynn O, Li, Wei, Rosenzweig, Frank, Rubin, Michael R, Saha, Margaret S, Sandoz, James, Shaffer, Christopher D, Taylor, Barbara, Temple, Louise, Vazquez, Edwin, Ware, Vassie C, Barker, Lucia P, Bradley, Kevin W, Jacobs-Sera, Deborah, Pope, Welkin H, Russell, Daniel A, Cresawn, Steven G, Lopatto, David, Bailey, Cheryl P, Hatfull, Graham F

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Mapping and phenotypic analysis of spontaneous isatin-β-thiosemicarbazone resistant mutants of vaccinia virus von Cresawn, Steven G, Prins, Cindy, Latner, Donald R, Condit, Richard C

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Comparative Genomic Analysis of 60 Mycobacteriophage Genomes: Genome Clustering, Gene Acquisition, and Gene Size von Hatfull, Graham F., Jacobs-Sera, Deborah, Lawrence, Jeffrey G., Pope, Welkin H., Russell, Daniel A., Ko, Ching-Chung, Weber, Rebecca J., Patel, Manisha C., Germane, Katherine L., Edgar, Robert H., Hoyte, Natasha N., Bowman, Charles A., Tantoco, Anthony T., Paladin, Elizabeth C., Myers, Marlana S., Smith, Alexis L., Grace, Molly S., Pham, Thuy T., O'Brien, Matthew B., Vogelsberger, Amy M., Hryckowian, Andrew J., Wynalek, Jessica L., Donis-Keller, Helen, Bogel, Matt W., Peebles, Craig L., Cresawn, Steven G., Hendrix, Roger W.

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A targeted approach to identification of vaccinia virus postreplicative transcription elongation factors: Genetic evidence for a role of the H5R gene in vaccinia transcription von Cresawn, Steven G, Condit, Richard C

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The Genome of Bacillus subtilis Bacteriophage SPO1 von Stewart, Charles R., Casjens, Sherwood R., Cresawn, Steven G., Houtz, Jennifer M., Smith, Alexis L., Ford, Michael E., Peebles, Craig L., Hatfull, Graham F., Hendrix, Roger W., Huang, Wai Mun, Pedulla, Marisa L.

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Genomic characterization and comparison of seven Myoviridae bacteriophage infecting Bacillus thuringiensis von Sauder, Amber Brooke, Quinn, McKenzie Rea, Brouillette, Alexis, Caruso, Steven, Cresawn, Steven, Erill, Ivan, Lewis, Lynn, Loesser-Casey, Kathryn, Pate, Morgan, Scott, Crystal, Stockwell, Stephanie, Temple, Louise

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A genome-wide overexpression screen reveals Mycobacterium smegmatis growth inhibitors encoded by mycobacteriophage Hammy von Amaya, Isabel, Edwards, Kaylia, Wise, Bethany M, Bhattacharyya, Ankita, Pablo, Clint H D, Mushrush, Ember, Coats, Amber N, Dao, Sara, Dittmar, Grace, Gore, Taylor, Jarva, Taiya M, Kenkebashvili, Giorgi, Rathan-Kumar, Sudiksha, Reyes, Gabriella M, Watts, Garrett L, Watts, Victoria Kalene, Dubrow, Deena, Lewis, Gabrielle, Stone, Benjamin H, Xue, Bingjie, Cresawn, Steven G, Mavrodi, Dmitri, Sivanathan, Viknesh, Heller, Danielle

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Genomics and bioinformatics in undergraduate curricula: Contexts for hybrid laboratory/lecture courses for entering and advanced science students von Temple, Louise, Cresawn, Steven G., Monroe, Jonathan D.

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Cluster M Mycobacteriophages Bongo, PegLeg, and Rey with Unusually Large Repertoires of tRNA Isotypes von Pope, Welkin H, Anders, Kirk R, Baird, Madison, Bowman, Charles A, Boyle, Michelle M, Broussard, Gregory W, Chow, Tiffany, Clase, Kari L, Cooper, Shannon, Cornely, Kathleen A, DeJong, Randall J, Delesalle, Veronique A, Deng, Lisa, Dunbar, David, Edgington, Nicholas P, Ferreira, Christina M, Weston Hafer, Kathleen, Hartzog, Grant A, Hatherill, J Robert, Hughes, Lee E, Ipapo, Khristina, Krukonis, Greg P, Meier, Christopher G, Monti, Denise L, Olm, Matthew R, Page, Shallee T, Peebles, Craig L, Rinehart, Claire A, Rubin, Michael R, Russell, Daniel A, Sanders, Erin R, Schoer, Morgan, Shaffer, Christopher D, Wherley, James, Vazquez, Edwin, Yuan, Han, Zhang, Daiyuan, Cresawn, Steven G, Jacobs-Sera, Deborah, Hendrix, Roger W, Hatfull, Graham F

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An isatin-beta-thiosemicarbazone-resistant vaccinia virus containing a mutation in the second largest subunit of the viral RNA polymerase is defective in transcription elongation von Prins, Cindy, Cresawn, Steven G, Condit, Richard C

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Genome Sequences of Three Cluster AU Arthrobacter Phages, Caterpillar, Nightmare, and Teacup von Adair, Tamarah L, Stowe, Emily, Pizzorno, Marie C, Krukonis, Gregory, Harrison, Melinda, Cresawn, Steven G, Garlena, Rebecca A, Russell, Daniel A, Pope, Welkin H, Jacobs-Sera, Deborah, Hatfull, Graham F

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