Toward Automatic Reconstruction of a Highly Resolved Tree of Life von Ciccarelli, Francesca D, Doerks, Tobias, Mering, Christian von, Creevey, Christopher J, Snel, Berend, Bork, Peer

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Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified von Keane, Thomas M, Creevey, Christopher J, Pentony, Melissa M, Naughton, Thomas J, Mclnerney, James O

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Clann: investigating phylogenetic information through supertree analyses von Creevey, C. J., McInerney, J. O.

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Genome phylogenies indicate a meaningful alpha-proteobacterial phylogeny and support a grouping of the mitochondria with the Rickettsiales von Fitzpatrick, David A, Creevey, Christopher J, McInerney, James O

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The Opisthokonta and the Ecdysozoa may not be clades: stronger support for the grouping of plant and animal than for animal and fungi and stronger support for the Coelomata than Ec... von Philip, Gayle K, Creevey, Christopher J, McInerney, James O

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Does a tree–like phylogeny only exist at the tips in the prokaryotes? von Creevey, Christopher J., Fitzpatrick, David A., Philip, Gayle K., Kinsella, Rhoda J., O'Connell, Mary J., Pentony, Melissa M., Travers, Simon A., Wilkinson, Mark, McInerney, James O.

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Fatty Acid Biosynthesis in Mycobacterium tuberculosis: Lateral Gene Transfer, Adaptive Evolution, and Gene Duplication von Kinsella, Rhoda J., Fitzpatrick, David A., Creevey, Christopher J., McInerney, James O.

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CRANN: detecting adaptive evolution in protein-coding DNA sequences von Creevey, C.J., McInerney, J.O.

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An algorithm for detecting directional and non-directional positive selection, neutrality and negative selection in protein coding DNA sequences von Creevey, Christopher J, McInerney, James O

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Evidence of positive Darwinian selection in putative meningococcal vaccine antigens von Fitzpatrick, David A, Creevey, Christopher J, McInerney, James O

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Inadvertent Paralog Inclusion Drives Artifactual Topologies and Timetree Estimates in Phylogenomics von Siu-Ting, K, Torres-Sánchez, M, San Mauro, D, Wilcockson, D, Wilkinson, M, Pisani, D, O'Connell, MJ, Creevey, CJ

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Signatures of the Evolution of Parthenogenesis and Cryptobiosis in the Genomes of Panagrolaimid Nematodes von Schiffer, PH, Danchin, EGJ, Burnell, AM, Creevey, CJ, Wong, S, Dix, I, O'Mahony, G, Culleton, BA, Rancurel, C, Stier, G, Martínez-Salazar, EA, Marconi, A, Trivedi, U, Kroiher, M, Thorne, MAS, Schierenberg, E, Wiehe, T, Blaxter, M

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Gene Fusions derived by transcriptional readthrough are Driven by Segmental Duplication in Human von McCartney, AM, Hyland, EM, Cormican, P, Moran, RJ, Webb, AE, Lee, KD, Hernandez-Rodriguez, J, Prado-Martinez, J, Creevey, CJ, Aspden, JL, McInerney, JO, Marques-Bonet, T, O'Connell, MJ

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