Sub-angstrom accuracy in protein loop reconstruction by robotics-inspired conformational sampling von Kortemme, Tanja, Coutsias, Evangelos A, Mandell, Daniel J

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Protein loop modeling by using fragment assembly and analytical loop closure von Lee, Julian, Lee, Dongseon, Park, Hahnbeom, Coutsias, Evangelos A., Seok, Chaok

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Using quaternions to calculate RMSD von Coutsias, Evangelos A., Seok, Chaok, Dill, Ken A.

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A kinematic view of loop closure von Coutsias, Evangelos A., Seok, Chaok, Jacobson, Matthew P., Dill, Ken A.

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Protein secondary structure motifs: A kinematic construction von Hassan, Mosavverul, Coutsias, Evangelos A.

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RMSD and Symmetry von Coutsias, Evangelos A., Wester, Michael J.

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Kinematic Reconstruction of Cyclic Peptides and Protein Backbones from Partial Data von Hassan, Mosavverul, Coutsias, Evangelos A

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Algorithmic dimensionality reduction for molecular structure analysis von Brown, W. Michael, Martin, Shawn, Pollock, Sara N., Coutsias, Evangelos A., Watson, Jean-Paul

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Exact Analytical Algorithm for the Solvent-Accessible Surface Area and Derivatives in Implicit Solvent Molecular Simulations on GPUs von Cao, Xin, Hummel, Michelle H., Wang, Yuzhang, Simmerling, Carlos, Coutsias, Evangelos A.

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Selective Inhibition of Initiator versus Executioner Caspases Using Small Peptides Containing Unnatural Amino Acids von Vickers, Chris J, González-Páez, Gonzalo E, Litwin, Kevin M, Umotoy, Jeffrey C, Coutsias, Evangelos A, Wolan, Dennis W

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Crustwater: Modeling Hydrophobic Solvation von Yadav, Ajeet Kumar, Bandyopadhyay, Pradipta, Coutsias, Evangelos A., Dill, Ken A.

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Accurate ligand–protein docking in CASP15 using the ClusPro LigTBM server von Kotelnikov, Sergei, Ashizawa, Ryota, Popov, Konstantin I., Khan, Omeir, Ignatov, Mikhail, Li, Stan Xiaogang, Hassan, Mosavverul, Coutsias, Evangelos A., Poda, Gennady, Padhorny, Dzmitry, Tropsha, Alexander, Vajda, Sandor, Kozakov, Dima

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Topology of cyclo-octane energy landscape von Martin, Shawn, Thompson, Aidan, Coutsias, Evangelos A., Watson, Jean-Paul

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Exhaustive Conformational Sampling of Complex Fused Ring Macrocycles Using Inverse Kinematics von Coutsias, Evangelos A, Lexa, Katrina W, Wester, Michael J, Pollock, Sara N, Jacobson, Matthew P

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The FALC-Loop web server for protein loop modeling von Ko, Junsu, Lee, Dongseon, Park, Hahnbeom, Coutsias, Evangelos A., Lee, Julian, Seok, Chaok

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On the comparison of energy sources: Feasibility of radio frequency and ambient light harvesting von Korotkevich, Alexander O., Galochkina, Zhanna S., Lavrova, Olga, Coutsias, Evangelos A.

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Assessing Protein Loop Flexibility by Hierarchical Monte Carlo Sampling von Nilmeier, Jerome, Hua, Lan, Coutsias, Evangelos A, Jacobson, Matthew P

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Flexibility of Bricard’s linkages and other structures via resultants and computer algebra von Lewis, Robert H., Coutsias, Evangelos A.

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Constraint methods that accelerate free-energy simulations of biomolecules von Perez, Alberto, MacCallum, Justin L, Coutsias, Evangelos A, Dill, Ken A

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Scaffold Topologies. 1. Exhaustive Enumeration up to Eight Rings von Pollock, Sara N, Coutsias, Evangelos A, Wester, Michael J, Oprea, Tudor I

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