The fast changing landscape of sequencing technologies and their impact on microbial genome assemblies and annotation von Mavromatis, Konstantinos, Land, Miriam L, Brettin, Thomas S, Quest, Daniel J, Copeland, Alex, Clum, Alicia, Goodwin, Lynne, Woyke, Tanja, Lapidus, Alla, Klenk, Hans Peter, Cottingham, Robert W, Kyrpides, Nikos C

Volltext

Caldicellulosiruptor Core and Pangenomes Reveal Determinants for Noncellulosomal Thermophilic Deconstruction of Plant Biomass von Blumer-Schuette, Sara E, Giannone, Richard J, Zurawski, Jeffrey V, Ozdemir, Inci, Ma, Qin, Yin, Yanbin, Xu, Ying, Kataeva, Irina, Poole, Farris L, Adams, Michael W. W, Hamilton-Brehm, Scott D, Elkins, James G, Larimer, Frank W, Land, Miriam L, Hauser, Loren J, Cottingham, Robert W, Hettich, Robert L, Kelly, Robert M

Volltext

The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes von Seaver, Samuel M D, Liu, Filipe, Zhang, Qizhi, Jeffryes, James, Faria, José P, Edirisinghe, Janaka N, Mundy, Michael, Chia, Nicholas, Noor, Elad, Beber, Moritz E, Best, Aaron A, DeJongh, Matthew, Kimbrel, Jeffrey A, D’haeseleer, Patrik, McCorkle, Sean R, Bolton, Jay R, Pearson, Erik, Canon, Shane, Wood-Charlson, Elisha M, Cottingham, Robert W, Arkin, Adam P, Henry, Christopher S

Volltext

Metagenome-assembled genome extraction and analysis from microbiomes using KBase von Chivian, Dylan, Jungbluth, Sean P., Dehal, Paramvir S., Wood-Charlson, Elisha M., Canon, Richard S., Allen, Benjamin H., Clark, Mikayla M., Gu, Tianhao, Land, Miriam L., Price, Gavin A., Riehl, William J., Sneddon, Michael W., Sutormin, Roman, Zhang, Qizhi, Cottingham, Robert W., Henry, Chris S., Arkin, Adam P.

Volltext

Complete Genome Sequence of the Cellulolytic Thermophile Caldicellulosiruptor obsidiansis OB47T von Elkins, James G, Lochner, Adriane, Hamilton-Brehm, Scott D, Davenport, Karen Walston, Podar, Mircea, Brown, Steven D, Land, Miriam L, Hauser, Loren J, Klingeman, Dawn M, Raman, Babu, Goodwin, Lynne A, Tapia, Roxanne, Meincke, Linda J, Detter, J Chris, Bruce, David C, Han, Cliff S, Palumbo, Anthony V, Cottingham, Robert W, Keller, Martin, Graham, David E

Volltext

Publisher Correction: Metagenome-assembled genome extraction and analysis from microbiomes using KBase von Chivian, Dylan, Jungbluth, Sean P., Dehal, Paramvir S., Wood-Charlson, Elisha M., Canon, Richard S., Allen, Benjamin H., Clark, Mikayla M., Gu, Tianhao, Land, Miriam L., Price, Gavin A., Riehl, William J., Sneddon, Michael W., Sutormin, Roman, Zhang, Qizhi, Cottingham, Robert W., Henry, Chris S., Arkin, Adam P.

Volltext

Complete genome sequence of Luteolibacter sp. strain Populi, a member of phylum Verrucomicrobiota isolated from the Populus trichocarpa rhizosphere von Imai, Sora, Allen, Benjamin, Hochanadel, Leah H, Alexander, William G, Cottingham, Robert W, Schadt, Christopher W, Pelletier, Dale A, Podar, Mircea

Volltext

The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes von Seaver, Samuel M D, Liu, Filipe, Zhang, Qizhi, Jeffryes, James, Faria, José P, Edirisinghe, Janaka N, Mundy, Michael, Chia, Nicholas, Noor, Elad, Beber, Moritz E, Best, Aaron A, DeJongh, Matthew, Kimbrel, Jeffrey A, D’haeseleer, Patrik, McCorkle, Sean R, Bolton, Jay R, Pearson, Erik, Canon, Shane, Wood-Charlson, Elisha M, Cottingham, Robert W, Arkin, Adam P, Henry, Christopher S

Volltext

Scenario driven data modelling: a method for integrating diverse sources of data and data streams von Griffith, Shelton D, Quest, Daniel J, Brettin, Thomas S, Cottingham, Robert W

Volltext

Next generation models for storage and representation of microbial biological annotation von Quest, Daniel J, Land, Miriam L, Brettin, Thomas S, Cottingham, Robert W

Volltext

KBase: The United States Department of Energy Systems Biology Knowledgebase von Arkin, Adam P, Cottingham, Robert W, Henry, Christopher S, Harris, Nomi L, Stevens, Rick L, Maslov, Sergei, Dehal, Paramvir, Ware, Doreen, Perez, Fernando, Canon, Shane, Sneddon, Michael W, Henderson, Matthew L, Riehl, William J, Murphy-Olson, Dan, Chan, Stephen Y, Kamimura, Roy T, Kumari, Sunita, Drake, Meghan M, Brettin, Thomas S, Glass, Elizabeth M, Chivian, Dylan, Gunter, Dan, Weston, David J, Allen, Benjamin H, Baumohl, Jason, Best, Aaron A, Bowen, Ben, Brenner, Steven E, Bun, Christopher C, Chandonia, John-Marc, Chia, Jer-Ming, Colasanti, Ric, Conrad, Neal, Davis, James J, Davison, Brian H, DeJongh, Matthew, Devoid, Scott, Dietrich, Emily, Dubchak, Inna, Edirisinghe, Janaka N, Fang, Gang, Faria, José P, Frybarger, Paul M, Gerlach, Wolfgang, Gerstein, Mark, Greiner, Annette, Gurtowski, James, Haun, Holly L, He, Fei, Jain, Rashmi, Joachimiak, Marcin P, Keegan, Kevin P, Kondo, Shinnosuke, Kumar, Vivek, Land, Miriam L, Meyer, Folker, Mills, Marissa, Novichkov, Pavel S, Oh, Taeyun, Olsen, Gary J, Olson, Robert, Parrello, Bruce, Pasternak, Shiran, Pearson, Erik, Poon, Sarah S, Price, Gavin A, Ramakrishnan, Srividya, Ranjan, Priya, Ronald, Pamela C, Schatz, Michael C, Seaver, Samuel M D, Shukla, Maulik, Sutormin, Roman A, Syed, Mustafa H, Thomason, James, Tintle, Nathan L, Wang, Daifeng, Xia, Fangfang, Yoo, Hyunseung, Yoo, Shinjae, Yu, Dantong

Volltext

Complete Genome Sequences of Caldicellulosiruptor sp. Strain Rt8.B8, Caldicellulosiruptor sp. Strain Wai35.B1, and "Thermoanaerobacter cellulolyticus" von Lee, Laura L, Izquierdo, Javier A, Blumer-Schuette, Sara E, Zurawski, Jeffrey V, Conway, Jonathan M, Cottingham, Robert W, Huntemann, Marcel, Copeland, Alex, Chen, I-Min A, Kyrpides, Nikos, Markowitz, Victor, Palaniappan, Krishnaveni, Ivanova, Natalia, Mikhailova, Natalia, Ovchinnikova, Galina, Andersen, Evan, Pati, Amrita, Stamatis, Dimitrios, Reddy, T B K, Shapiro, Nicole, Nordberg, Henrik P, Cantor, Michael N, Hua, Susan X, Woyke, Tanja, Kelly, Robert M

Volltext

Avoiding Recomputation in Linkage Analysis von Schäffer, Alejandro A., Gupta, Sandeep K., Shriram, K., Cottingham, Robert W.

Volltext

Complete Genome Sequence of the Hyperthermophilic Sulfate-Reducing Bacterium Thermodesulfobacterium geofontis OPF15T von Elkins, James G, Hamilton-Brehm, Scott D, Lucas, Susan, Han, James, Lapidus, Alla, Cheng, Jan-Fang, Goodwin, Lynne A, Pitluck, Sam, Peters, Lin, Mikhailova, Natalia, Davenport, Karen W, Detter, John C, Han, Cliff S, Tapia, Roxanne, Land, Miriam L, Hauser, Loren, Kyrpides, Nikos C, Ivanova, Natalia N, Pagani, Ioanna, Bruce, David, Woyke, Tanja, Cottingham, Robert W

Volltext

Faster sequential genetic linkage computations von COTTINGHAM, R. W, IDURY, R. M, SCHÄFFER, A. A

Volltext

Metagenome-assembled genome extraction and analysis from microbiomes using KBase von Chivian, Dylan, Jungbluth, Sean P., Dehal, Paramvir S., Wood-Charlson, Elisha M., Canon, Richard S., Allen, Benjamin H., Clark, Mikayla M., Gu, Tianhao, Land, Miriam L., Price, Gavin A., Riehl, William J., Sneddon, Michael W., Sutormin, Roman, Zhang, Qizhi, Cottingham, Jr., Robert W., Henry, Chris S., Arkin, Adam P.

Volltext

KBase: The United States Department of Energy Systems Biology Knowledgebase von Arkin, Adam P., Cottingham, Robert W., Henry, Christopher S., Harris, Nomi L., Stevens, Rick L., Maslov, Sergei, Dehal, Paramvir, Ware, Doreen, Perez, Fernando, Canon, Shane, Sneddon, Michael W., Henderson, Matthew L., Riehl, William J., Murphy-Olson, Dan, Chan, Stephen Y., Kamimura, Roy T., Kumari, Sunita, Drake, Meghan M., Brettin, Thomas S., Glass, Elizabeth M., Chivian, Dylan, Gunter, Dan, Weston, David J., Allen, Benjamin H., Baumohl, Jason, Best, Aaron A., Bowen, Ben, Brenner, Steven E., Bun, Christopher C., Chandonia, John-Marc, Chia, Jer-Ming, Colasanti, Ric, Conrad, Neal, Davis, James J., Davison, Brian H., DeJongh, Matthew, Devoid, Scott, Dietrich, Emily, Dubchak, Inna, Edirisinghe, Janaka N., Fang, Gang, Faria, José P., Frybarger, Paul M., Gerlach, Wolfgang, Gerstein, Mark, Greiner, Annette, Gurtowski, James, Haun, Holly L., He, Fei, Jain, Rashmi, Joachimiak, Marcin P., Keegan, Kevin P., Kondo, Shinnosuke, Kumar, Vivek, Land, Miriam L., Meyer, Folker, Mills, Marissa, Novichkov, Pavel S., Oh, Taeyun, Olsen, Gary J., Olson, Robert, Parrello, Bruce, Pasternak, Shiran, Pearson, Erik, Poon, Sarah S., Price, Gavin A., Ramakrishnan, Srividya, Ranjan, Priya, Ronald, Pamela C., Schatz, Michael C., Seaver, Samuel M. D., Shukla, Maulik, Sutormin, Roman A., Syed, Mustafa H., Thomason, James, Tintle, Nathan L., Wang, Daifeng, Xia, Fangfang, Yoo, Hyunseung, Yoo, Shinjae, Yu, Dantong

Volltext

Plant Biosystems Design Research Roadmap 1.0 von Yang, Xiaohan, Medford, June I, Markel, Kasey, Shih, Patrick M, De Paoli, Henrique C, Trinh, Cong T, McCormick, Alistair J, Ployet, Raphael, Hussey, Steven G, Myburg, Alexander A, Jensen, Poul Erik, Hassan, Md Mahmudul, Zhang, Jin, Muchero, Wellington, Kalluri, Udaya C, Yin, Hengfu, Zhuo, Renying, Abraham, Paul E, Chen, Jin-Gui, Weston, David J, Yang, Yinong, Liu, Degao, Li, Yi, Labbe, Jessy, Yang, Bing, Lee, Jun Hyung, Cottingham, Robert W, Martin, Stanton, Lu, Mengzhu, Tschaplinski, Timothy J, Yuan, Guoliang, Lu, Haiwei, Ranjan, Priya, Mitchell, Julie C, Wullschleger, Stan D, Tuskan, Gerald A

Volltext

Caldicellulosiruptor Core and Pangenomes Reveal Determinants for von Blumer-Schuette, Sara E., Giannone, Richard J, Zurawski, Jeffrey V, Ozdemir, Inci, Ma, Qin, Yin, Yanbin, Xu, Ying, Kataeva, Irena, Poole, Farris, Adams, Michael W. W., Hamilton-Brehm, Scott, Elkins, James G, Larimer, Frank W, Land, Miriam L, Hauser, Loren John, Cottingham, Robert W, Hettich, Robert {Bob} L, Kelly, Robert M

Volltext

GDB: The Human Genome Database von Letovsky, Stanley I., Cottingham, Robert W., Porter, Christopher J., Li, Peter W. D.

Volltext