A comparison of per sample global scaling and per gene normalization methods for differential expression analysis of RNA-seq data von Li, Xiaohong, Brock, Guy N, Rouchka, Eric C, Cooper, Nigel G F, Wu, Dongfeng, O'Toole, Timothy E, Gill, Ryan S, Eteleeb, Abdallah M, O'Brien, Liz, Rai, Shesh N

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seekCRIT: Detecting and characterizing differentially expressed circular RNAs using high-throughput sequencing data von Chaabane, Mohamed, Andreeva, Kalina, Hwang, Jae Yeon, Kook, Tae Lim, Park, Juw Won, Cooper, Nigel G F

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Choice of library size normalization and statistical methods for differential gene expression analysis in balanced two-group comparisons for RNA-seq studies von Li, Xiaohong, Cooper, Nigel G F, O'Toole, Timothy E, Rouchka, Eric C

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A causal mediation model of ischemia reperfusion injury in the retina von Soliman, Maha, Andreeva, Kalina, Nasraoui, Olfa, Cooper, Nigel G F

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A combined approach with gene-wise normalization improves the analysis of RNA-seq data in human breast cancer subtypes von Li, Xiaohong, Rouchka, Eric C, Brock, Guy N, Yan, Jun, O'Toole, Timothy E, Tieri, David A, Cooper, Nigel G F

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MicroRNAs in the Neural Retina von Andreeva, Kalina, Cooper, Nigel G. F.

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Transcriptomic analysis of the zebrafish inner ear points to growth hormone mediated regeneration following acoustic trauma von Schuck, Julie B, Sun, Huifang, Penberthy, W Todd, Cooper, Nigel G F, Li, Xiaohong, Smith, Michael E

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Modeling microRNA-mRNA interactions using PLS regression in human colon cancer von Li, Xiaohong, Gill, Ryan, Cooper, Nigel G F, Yoo, Jae Keun, Datta, Susmita

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Sample size calculations for the differential expression analysis of RNA-seq data using a negative binomial regression model von Li, Xiaohong, Wu, Dongfeng, Cooper, Nigel G.F., Rai, Shesh N.

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Increased chondroitin sulfate proteoglycan expression in denervated brainstem targets following spinal cord injury creates a barrier to axonal regeneration overcome by chondroitina... von Massey, James M., Amps, Jeremy, Viapiano, Mariano S., Matthews, Russell T., Wagoner, Michelle R., Whitaker, Christopher M., Alilain, Warren, Yonkof, Alicia L., Khalyfa, Abdelnaby, Cooper, Nigel G.F., Silver, Jerry, Onifer, Stephen M.

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Analysis of probe level patterns in Affymetrix microarray data von Cambon, Alexander C, Khalyfa, Abdelnaby, Cooper, Nigel G F, Thompson, Caryn M

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Building a glaucoma interaction network using a text mining approach von Soliman, Maha, Nasraoui, Olfa, Cooper, Nigel G F

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Ischemia-reperfusion injury of the retina is linked to necroptosis via the ERK1/2-RIP3 pathway von Gao, Sheng, Andreeva, Kalina, Cooper, Nigel G F

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Characterization of the transcripts and protein isoforms for cytoplasmic polyadenylation element binding protein-3 (CPEB3) in the mouse retina von Wang, Xiang-Ping, Cooper, Nigel G F

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Comparative in Silico Analyses of Cpeb1-4 with Functional Predictions von Wang, Xiang-Ping, Cooper, Nigel G.F.

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Regulatory module network of basic/helix-loop-helix transcription factors in mouse brain von Li, Jing, Liu, Zijing J, Pan, Yuchun C, Liu, Qi, Fu, Xing, Cooper, Nigel G F, Li, Yixue, Qiu, Mengsheng, Shi, Tieliu

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MPrime: efficient large scale multiple primer and oligonucleotide design for customized gene microarrays von Rouchka, Eric C, Khalyfa, Abdelnaby, Cooper, Nigel G F

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Circular RNAs: New Players in Gene Regulation von Andreeva, Kalina, Cooper, Nigel G. F.

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CaMKIIαB mediates a survival response in retinal ganglion cells subjected to a glutamate stimulus von WEI FAN, XIAOHONG LI, COOPER, Nigel G. F

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Regulatory networks in retinal ischemia-reperfusion injury von Andreeva, Kalina, Soliman, Maha M, Cooper, Nigel G F

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