Functional annotation of the cattle genome through systematic discovery and characterization of chromatin states and butyrate-induced variations von Fang, Lingzhao, Liu, Shuli, Liu, Mei, Kang, Xiaolong, Lin, Shudai, Li, Bingjie, Connor, Erin E, Baldwin, 6th, Ransom L, Tenesa, Albert, Ma, Li, Liu, George E, Li, Cong-Jun

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Genome-wide copy number variant analysis reveals variants associated with 10 diverse production traits in Holstein cattle von Zhou, Yang, Connor, Erin E, Wiggans, George R, Lu, Yongfang, Tempelman, Robert J, Schroeder, Steven G, Chen, Hong, Liu, George E

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Functional annotation of regulatory elements in cattle genome reveals the roles of extracellular interaction and dynamic change of chromatin states in rumen development during wean... von Gao, Yahui, Liu, Shuli, Baldwin VI, Ransom L., Connor, Erin E., Cole, John B., Ma, Li, Fang, Lingzhao, Li, Cong-jun, Liu, George E.

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Comparative whole genome DNA methylation profiling across cattle tissues reveals global and tissue-specific methylation patterns von Zhou, Yang, Liu, Shuli, Hu, Yan, Fang, Lingzhao, Gao, Yahui, Xia, Han, Schroeder, Steven G, Rosen, Benjamin D, Connor, Erin E, Li, Cong-Jun, Baldwin, Ransom L, Cole, John B, Van Tassell, Curtis P, Yang, Liguo, Ma, Li, Liu, George E

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Selection of internal reference genes for normalization of reverse transcription quantitative polymerase chain reaction (RT-qPCR) analysis in the rumen epithelium von Die, Jose V, Baldwin, Ransom L, Rowland, Lisa J, Li, Robert, Oh, Sunghee, Li, Congjun, Connor, Erin E, Ranilla, Maria-Jose

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Sharing of either phenotypes or genetic variants can increase the accuracy of genomic prediction of feed efficiency von Bolormaa, Sunduimijid, MacLeod, Iona M, Khansefid, Majid, Marett, Leah C, Wales, William J, Miglior, Filippo, Baes, Christine F, Schenkel, Flavio S, Connor, Erin E, Manzanilla-Pech, Coralia I V, Stothard, Paul, Herman, Emily, Nieuwhof, Gert J, Goddard, Michael E, Pryce, Jennie E

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Gene expression in bovine rumen epithelium during weaning identifies molecular regulators of rumen development and growth von Connor, Erin E., Baldwin, Ransom L., Li, Cong-jun, Li, Robert W., Chung, Hoyoung

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Transcriptional Reprogramming in Rumen Epithelium during the Developmental Transition of Pre-Ruminant to the Ruminant in Cattle von Baldwin VI, Ransom L., Liu, Mei, Connor, Erin E., Ramsay, Timothy G., Liu, George E., Li, Cong-Jun

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Establishment and transcriptomic analyses of a cattle rumen epithelial primary cells (REPC) culture by bulk and single-cell RNA sequencing to elucidate interactions of butyrate and... von Lin, Shudai, Fang, Lingzhao, Kang, Xiaolong, Liu, Shuli, Liu, Mei, Connor, Erin E., Baldwin, Ransom L., Liu, George, Li, Cong-Jun

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An alternative interpretation of residual feed intake by phenotypic recursive relationships in dairy cattle von Wu, Xiao-Lin, Parker Gaddis, Kristen L., Burchard, Javier, Norman, H. Duane, Nicolazzi, Ezequiel, Connor, Erin E., Cole, John B., Durr, Joao

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Analysis of copy number variations in Holstein cows identify potential mechanisms contributing to differences in residual feed intake von Hou, Yali, Bickhart, Derek M., Chung, Hoyoung, Hutchison, Jana L., Norman, H. Duane, Connor, Erin E., Liu, George E.

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Effects of Incorporating Dry Matter Intake and Residual Feed Intake into a Selection Index for Dairy Cattle Using Deterministic Modeling von Houlahan, Kerry, Schenkel, Flavio S, Hailemariam, Dagnachew, Lassen, Jan, Kargo, Morten, Cole, John B, Connor, Erin E, Wegmann, Silvia, Junior, Oliveira, Miglior, Filippo, Fleming, Allison, Chud, Tatiane C S, Baes, Christine F

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The essence of appetite: does olfactory receptor variation play a role? von Connor, Erin E, Zhou, Yang, Liu, George E

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Initial analysis of copy number variations in cattle selected for resistance or susceptibility to intestinal nematodes von Liu, George E, Brown, Twain, Hebert, Deborah A, Cardone, Maria Francesca, Hou, Yali, Choudhary, Ratan K, Shaffer, Jessica, Amazu, Chinwendu, Connor, Erin E, Ventura, Mario, Gasbarre, Louis C

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Fine-mapping milk production quantitative trait loci on BTA6: analysis of the bovine osteopontin gene von Schnabel, R.D, Kim, J.J, Ashwell, M.S, Sonstegard, T.S, Van Tassell, C.P, Connor, E.E, Taylor, J.F

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Characterization of the rumen microbiota of pre-ruminant calves using metagenomic tools von Li, Robert W., Connor, Erin E., Li, Congjun, Baldwin, VI, Ransom L., Sparks, Michael E.

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Effects of increased milking frequency on gene expression in the bovine mammary gland von Connor, Erin E, Siferd, Stephen, Elsasser, Theodore H, Evock-Clover, Christina M, Van Tassell, Curtis P, Sonstegard, Tad S, Fernandes, Violet M, Capuco, Anthony V

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Single-cell transcriptomic analyses of dairy cattle ruminal epithelial cells during weaning von Gao, Yahui, Fang, Lingzhao, Baldwin, Ransom L., Connor, Erin E., Cole, John B., Van Tassell, Curtis P., Ma, Li, Li, Cong-jun, Liu, George E.

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Unraveling the Genetic Basis of Feed Efficiency in Cattle through Integrated DNA Methylation and CattleGTEx Analysis von Hu, Zhenbin, Boschiero, Clarissa, Li, Cong-Jun, Connor, Erin E, Baldwin, 6th, Ransom L, Liu, George E

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Comparative whole genome DNA methylation profiling of cattle sperm and somatic tissues reveals striking hypomethylated patterns in sperm von Zhou, Yang, Connor, Erin E, Bickhart, Derek M, Li, Congjun, Baldwin, Ransom L, Schroeder, Steven G, Rosen, Benjamin D, Yang, Liguo, Van Tassell, Curtis P, Liu, George E

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