CRIS.py: A Versatile and High-throughput Analysis Program for CRISPR-based Genome Editing von Connelly, Jon P., Pruett-Miller, Shondra M.

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A Survey of Validation Strategies for CRISPR-Cas9 Editing von Sentmanat, Monica F., Peters, Samuel T., Florian, Colin P., Connelly, Jon P., Pruett-Miller, Shondra M.

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cBAF complex components and MYC cooperate early in CD8+ T cell fate von Guo, Ao, Huang, Hongling, Zhu, Zhexin, Chen, Mark J., Shi, Hao, Yuan, Sujing, Sharma, Piyush, Connelly, Jon P., Liedmann, Swantje, Dhungana, Yogesh, Li, Zhenrui, Haydar, Dalia, Yang, Mao, Beere, Helen, Yustein, Jason T., DeRenzo, Christopher, Pruett-Miller, Shondra M., Crawford, Jeremy Chase, Krenciute, Giedre, Roberts, Charles W. M., Chi, Hongbo, Green, Douglas R.

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High-Throughput Analysis of CRISPR-Cas9 Editing Outcomes in Cell and Animal Models Using CRIS.py von Narina, Shilpa, Connelly, Jon P., Pruett-Miller, Shondra M.

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Single-cell CRISPR screens in vivo map T cell fate regulomes in cancer von Zhou, Peipei, Shi, Hao, Huang, Hongling, Sun, Xiang, Yuan, Sujing, Chapman, Nicole M., Connelly, Jon P., Lim, Seon Ah, Saravia, Jordy, KC, Anil, Pruett-Miller, Shondra M., Chi, Hongbo

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survey of ex vivo/in vitro transduction efficiency of mammalian primary cells and cell lines with Nine natural adeno-associated virus (AAV1-9) and one engineered adeno-associated v... von Ellis, Brian L, Hirsch, Matthew L, Barker, Jenny C, Connelly, Jon P, Steininger, Robert J, III, Porteus, Matthew H

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The protein phosphatase PP6 promotes RIPK1-dependent PANoptosis von Bynigeri, Ratnakar R, Malireddi, R K Subbarao, Mall, Raghvendra, Connelly, Jon P, Pruett-Miller, Shondra M, Kanneganti, Thirumala-Devi

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A Cancer-Specific Ubiquitin Ligase Drives mRNA Alternative Polyadenylation by Ubiquitinating the mRNA 3′ End Processing Complex von Yang, Seung Wook, Li, Lei, Connelly, Jon P., Porter, Shaina N., Kodali, Kiran, Gan, Haiyun, Park, Jung Mi, Tacer, Klementina Fon, Tillman, Heather, Peng, Junmin, Pruett-Miller, Shondra M., Li, Wei, Potts, Patrick Ryan

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CRISPR screens unveil signal hubs for nutrient licensing of T cell immunity von Long, Lingyun, Wei, Jun, Lim, Seon Ah, Raynor, Jana L., Shi, Hao, Connelly, Jon P., Wang, Hong, Guy, Cliff, Xie, Boer, Chapman, Nicole M., Fu, Guotong, Wang, Yanyan, Huang, Hongling, Su, Wei, Saravia, Jordy, Risch, Isabel, Wang, Yong-Dong, Li, Yuxin, Niu, Mingming, Dhungana, Yogesh, KC, Anil, Zhou, Peipei, Vogel, Peter, Yu, Jiyang, Pruett-Miller, Shondra M., Peng, Junmin, Chi, Hongbo

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Short tandem repeat profiling via next-generation sequencing for cell line authentication von Chen, Yi-Hsien, Connelly, Jon P, Florian, Colin, Cui, Xiaoxia, Pruett-Miller, Shondra M

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Genome-wide mapping of cancer dependency genes and genetic modifiers of chemotherapy in high-risk hepatoblastoma von Fang, Jie, Singh, Shivendra, Cheng, Changde, Natarajan, Sivaraman, Sheppard, Heather, Abu-Zaid, Ahmed, Durbin, Adam D., Lee, Ha Won, Wu, Qiong, Steele, Jacob, Connelly, Jon P., Jin, Hongjian, Chen, Wenan, Fan, Yiping, Pruett-Miller, Shondra M., Rehg, Jerold E., Koo, Selene C., Santiago, Teresa, Emmons, Joseph, Cairo, Stefano, Wang, Ruoning, Glazer, Evan S., Murphy, Andrew J., Chen, Taosheng, Davidoff, Andrew M., Armengol, Carolina, Easton, John, Chen, Xiang, Yang, Jun

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Targeted correction of RUNX1 mutation in FPD patient-specific induced pluripotent stem cells rescues megakaryopoietic defects von Connelly, Jon P., Kwon, Erika M., Gao, Yongxing, Trivedi, Niraj S., Elkahloun, Abdel G., Horwitz, Marshall S., Cheng, Linzhao, Liu, P. Paul

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Stromal-induced epithelial-mesenchymal transition induces targetable drug resistance in acute lymphoblastic leukemia von Park, Chun Shik, Yoshihara, Hiroki, Gao, Qingsong, Qu, Chunxu, Iacobucci, Ilaria, Ghate, Pankaj S., Connelly, Jon P., Pruett-Miller, Shondra M., Wagner, Ben, Robinson, Camenzind G., Mishra, Ashutosh, Peng, Junmin, Yang, Lei, Rankovic, Zoran, Finkelstein, David, Luger, Selina, Litzow, Mark, Paietta, Elisabeth M., Hebbar, Nikhil, Velasquez, M. Paulina, Mullighan, Charles G.

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Generation of iPSC lines and isogenic gene-corrected lines from two individuals with RPS19-mutated Diamond-Blackfan anemia syndrome von Osuna, Maria Angeles Lillo, Han, Lei, Connelly, Jon P., Miller-Preutt, Shondra, Weiss, Mitchell J., Wlodarski, Marcin W., Bhoopalan, Senthil Velan

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CRISPR screens unveil nutrient-dependent lysosomal and mitochondrial nodes impacting intestinal tissue-resident memory CD8+ T cell formation von Raynor, Jana L., Collins, Nicholas, Shi, Hao, Guy, Cliff, Saravia, Jordy, Ah Lim, Seon, Chapman, Nicole M., Zhou, Peipei, Wang, Yan, Sun, Yu, Risch, Isabel, Hu, Haoran, KC, Anil, Sun, Renqiang, Shrestha, Sharad, Huang, Hongling, Connelly, Jon P., Pruett-Miller, Shondra M., Reina-Campos, Miguel, Goldrath, Ananda W., Belkaid, Yasmine, Chi, Hongbo

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Correction: Profiling chromatin accessibility in pediatric acute lymphoblastic leukemia identifies subtype-specific chromatin landscapes and gene regulatory networks von Diedrich, Jonathan D., Dong, Qian, Ferguson, Daniel C., Bergeron, Brennan P., Autry, Robert J., Qian, Maoxiang, Yang, Wenjian, Smith, Colton, Papizan, James B., Connelly, Jon P., Hagiwara, Kohei, Crews, Kristine R., Pruett-Miller, Shondra M., Pui, Ching-Hon, Yang, Jun J., Relling, Mary V., Evans, William E., Savic, Daniel

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A proteomics approach for the identification of cullin-9 (CUL9) related signaling pathways in induced pluripotent stem cell models von Ortolano, Natalya A, Romero-Morales, Alejandra I, Rasmussen, Megan L, Bodnya, Caroline, Kline, Leigh A, Joshi, Piyush, Connelly, Jon P, Rose, Kristie L, Pruett-Miller, Shondra M, Gama, Vivian

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Foxp3 enhancers synergize to maximize regulatory T cell suppressive capacity von Zong, Xinying, Hao, Xiaolei, Xu, Beisi, Crawford, Jeremy Chase, Wright, Shaela, Li, Jun, Zhang, Yang, Bai, Lu, He, Minghong, Jiang, Menglin, Fan, Yiping, Connelly, Jon P, Pruett-Miller, Shondra M, Berns, Hartmut, Janke, Laura, Li, Chunliang, Feng, Yongqiang

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Profiling chromatin accessibility in pediatric acute lymphoblastic leukemia identifies subtype-specific chromatin landscapes and gene regulatory networks von Diedrich, Jonathan D., Dong, Qian, Ferguson, Daniel C., Bergeron, Brennan P., Autry, Robert J., Qian, Maoxiang, Yang, Wenjian, Smith, Colton, Papizan, James B., Connelly, Jon P., Hagiwara, Kohei, Crews, Kristine R., Pruett-Miller, Shondra M., Pui, Ching-Hon, Yang, Jun J., Relling, Mary V., Evans, William E., Savic, Daniel

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The Heme-Regulated Inhibitor Pathway Modulates Susceptibility of Poor Prognosis B-Lineage Acute Leukemia to BH3-Mimetics von Smith, Kaitlyn H, Budhraja, Amit, Lynch, John, Roberts, Kathryn, Panetta, John C, Connelly, Jon P, Turnis, Meghan E, Pruett-Miller, Shondra M, Schuetz, John D, Mullighan, Charles G, Opferman, Joseph T

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