Application of asymmetric statistical potentials to antibody―protein docking von BRENKE, Ryan, HALL, David R, CHUANG, Gwo-Yu, COMEAU, Stephen R, BOHNUUD, Tanggis, BEGLOV, Dmitri, SCHUELER-FURMAN, Ora, VAJDA, Sandor, KOZAKOV, Dima

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Achieving reliability and high accuracy in automated protein docking: Cluspro, PIPER, SDU, and stability analysis in CAPRI rounds 13-19 von Kozakov, Dima, Hall, David R., Beglov, Dmitri, Brenke, Ryan, Comeau, Stephen R., Shen, Yang, Li, Keyong, Zheng, Jiefu, Vakili, Pirooz, Paschalidis, Ioannis Ch, Vajda, Sandor

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ClusPro: an automated docking and discrimination method for the prediction of protein complexes von Comeau, Stephen R., Gatchell, David W., Vajda, Sandor, Camacho, Carlos J.

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Inhibition of Plasma Kallikrein by a Highly Specific Active Site Blocking Antibody von Kenniston, Jon A., Faucette, Ryan R., Martik, Diana, Comeau, Stephen R., Lindberg, Allison P., Kopacz, Kris J., Conley, Gregory P., Chen, Jie, Viswanathan, Malini, Kastrapeli, Niksa, Cosic, Janja, Mason, Shauna, DiLeo, Mike, Abendroth, Jan, Kuzmic, Petr, Ladner, Robert C., Edwards, Thomas E., TenHoor, Christopher, Adelman, Burt A., Nixon, Andrew E., Sexton, Daniel J.

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DARS (Decoys As the Reference State) Potentials for Protein-Protein Docking von Chuang, Gwo-Yu, Kozakov, Dima, Brenke, Ryan, Comeau, Stephen R., Vajda, Sandor

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Large-scale data mining of four billion human antibody variable regions reveals convergence between therapeutic and natural antibodies that constrains search space for biologics dr... von Dudzic, Pawel, Chomicz, Dawid, Kończak, Jarosław, Satława, Tadeusz, Janusz, Bartosz, Wrobel, Sonia, Gawłowski, Tomasz, Jaszczyszyn, Igor, Bielska, Weronika, Demharter, Samuel, Spreafico, Roberto, Schulte, Lukas, Martin, Kyle, Comeau, Stephen R, Krawczyk, Konrad

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Structural Considerations in Affinity Maturation of Antibody-Based Biotherapeutic Candidates von Comeau, Stephen R., Thorsteinson, Nels, Kumar, Sandeep

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Structure-Based Optimization of Antibody-Based Biotherapeutics for Improved Developability: A Practical Guide for Molecular Modelers von Thorsteinson, Nels, Comeau, Stephen R., Kumar, Sandeep

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PIPER: An FFT-based protein docking program with pairwise potentials von Kozakov, Dima, Brenke, Ryan, Comeau, Stephen R., Vajda, Sandor

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Benchmarking antibody clustering methods using sequence, structural, and machine learning similarity measures for antibody discovery applications von Chomicz, Dawid, Kończak, Jarosław, Wróbel, Sonia, Satława, Tadeusz, Dudzic, Paweł, Janusz, Bartosz, Tarkowski, Mateusz, Deszyński, Piotr, Gawłowski, Tomasz, Kostyn, Anna, Orłowski, Marek, Klaus, Tomasz, Schulte, Lukas, Martin, Kyle, Comeau, Stephen R, Krawczyk, Konrad

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ClusPro: Performance in CAPRI rounds 6-11 and the new server von Comeau, Stephen R., Kozakov, Dima, Brenke, Ryan, Shen, Yang, Beglov, Dmitri, Vajda, Sandor

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ClusPro: a fully automated algorithm for protein–protein docking von Comeau, Stephen R., Gatchell, David W., Vajda, Sandor, Camacho, Carlos J.

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Structural basis for pH-insensitive inhibition of immunoglobulin G recycling by an anti-neonatal Fc receptor antibody von Kenniston, Jon A., Taylor, Brandy M., Conley, Gregory P., Cosic, Janja, Kopacz, Kris J., Lindberg, Allison P., Comeau, Stephen R., Atkins, Kateri, Bullen, Jameson, TenHoor, Christopher, Adelman, Burt A., Sexton, Daniel J., Edwards, Thomas E., Nixon, Andrew E.

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Predicting oligomeric assemblies: N-mers a primer von Comeau, Stephen R., Camacho, Carlos J.

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Docking with PIPER and refinement with SDU in rounds 6-11 of CAPRI von Shen, Yang, Brenke, Ryan, Kozakov, Dima, Comeau, Stephen R., Beglov, Dmitri, Vajda, Sandor

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Performance of the first protein docking server ClusPro in CAPRI rounds 3-5 von Comeau, Stephen R., Vajda, Sandor, Camacho, Carlos J.

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Abstract 3661: Breaking down the barrier restricting infiltration and differentiation of APC in the tumor microenvironment with a first-in-class antibody targeting Semaphorin4D, an... von Evans, Elizabeth E., Bussler, Holm, Mallow, Crystal, Reilly, Christine, Torno, Sebold, Scrivens, Maria, Foster, Cathie, Howell, Alan, Comeau, Stephen R., Balch, Leslie, Knapp, Alyssa, Leonard, John E., Fisher, Terrence L., Hu-Lieskovan, Siwen, Ribas, Antoni, Smith, Ernest S., Zauderer, Maurice

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Discovery and Characterization of a Highly Specific Antibody Inhibitor of Factor XIIa, and the Subsequent Generation of a Factor XIIa/Plasma Kallikrein Bispecific Antibody von Mason, Shauna D, Kenniston, Jon, Comeau, Stephen R, Conley, Gregory P, Kastrapeli, Niksa, Kopacz, Kris J, Lindberg, Allison P, Cosic, Janja, Kivaa, Monicah, Qiu, James A, Faucette, Ryan, Sexton, Dan, Tenhoor, Christopher, Gailani, David, Dickeson, S. Kent, Cheng, Qiufang, Wallisch, Michael, Gruber, Andras, Adelman, Burt, Nixon, Andrew

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Discovery and Characterization Of a Highly Specific Antibody Inhibitor Of Plasma Kallikrein von Kenniston, Jon A, Sexton, Daniel J, Martik, Diana, Faucette, Ryan R, Viswanathan, Malini, Kastrapeli, Niksa, Kopacz, Kris J, Conley, Greg P, Lindberg, Allison P, Cosic, Janja, Comeau, Stephen R, Mason, Shauna, DiLeo, Mike, Chen, Jie, Ladner, Robert C, Edwards, Thomas E, TenHoor, Christopher, Nixon, Andrew E, Adelman, Burt

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Anti-plasma kallikrein antibodies von NIXON, Andrew, KENNISTON, Jon A, COMEAU, Stephen R

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