The past and future of tuberculosis research von Comas, Iñaki, Gagneux, Sebastien

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Whole-genome sequencing of rifampicin-resistant Mycobacterium tuberculosis strains identifies compensatory mutations in RNA polymerase genes von Comas, Iñaki, Borrell, Sonia, Roetzer, Andreas, Rose, Graham, Malla, Bijaya, Kato-Maeda, Midori, Galagan, James, Niemann, Stefan, Gagneux, Sebastien

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Human macrophage responses to clinical isolates from the Mycobacterium tuberculosis complex discriminate between ancient and modern lineages von Portevin, Damien, Gagneux, Sébastien, Comas, Iñaki, Young, Douglas

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Genotyping of genetically monomorphic bacteria: DNA sequencing in Mycobacterium tuberculosis highlights the limitations of current methodologies von Comas, Iñaki, Homolka, Susanne, Niemann, Stefan, Gagneux, Sebastien

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Legionella effectors reflect strength in diversity von Comas, Iñaki

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A standardised method for interpreting the association between mutations and phenotypic drug resistance in Mycobacterium tuberculosis von Miotto, Paolo, Tessema, Belay, Tagliani, Elisa, Chindelevitch, Leonid, Starks, Angela M, Emerson, Claudia, Hanna, Debra, Kim, Peter S, Liwski, Richard, Zignol, Matteo, Gilpin, Christopher, Niemann, Stefan, Denkinger, Claudia M, Fleming, Joy, Warren, Robin M, Crook, Derrick, Posey, James, Gagneux, Sebastien, Hoffner, Sven, Rodrigues, Camilla, Comas, Iñaki, Engelthaler, David M, Murray, Megan, Alland, David, Rigouts, Leen, Lange, Christoph, Dheda, Keertan, Hasan, Rumina, Ranganathan, Uma Devi K, McNerney, Ruth, Ezewudo, Matthew, Cirillo, Daniela M, Schito, Marco, Köser, Claudio U, Rodwell, Timothy C

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Genomic analyses of Mycobacterium tuberculosis from human lung resections reveal a high frequency of polyclonal infections von Moreno-Molina, Miguel, Shubladze, Natalia, Khurtsilava, Iza, Avaliani, Zaza, Bablishvili, Nino, Torres-Puente, Manuela, Villamayor, Luis, Gabrielian, Andrei, Rosenthal, Alex, Vilaplana, Cristina, Gagneux, Sebastien, Kempker, Russell R., Vashakidze, Sergo, Comas, Iñaki

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Genome-wide mutational biases fuel transcriptional diversity in the Mycobacterium tuberculosis complex von Chiner-Oms, Álvaro, Berney, Michael, Boinett, Christine, González-Candelas, Fernando, Young, Douglas B., Gagneux, Sebastien, Jacobs, William R., Parkhill, Julian, Cortes, Teresa, Comas, Iñaki

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A role for systems epidemiology in tuberculosis research von Comas, Iñaki, Gagneux, Sebastien

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Human T cell epitopes of Mycobacterium tuberculosis are evolutionarily hyperconserved von Niemann, Stefan, Galagan, James, Kremer, Kristin, Gagneux, Sebastien, Comas, Iñaki, Ernst, Joel D, Chakravartti, Jaidip, Small, Peter M

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Contaminant DNA in bacterial sequencing experiments is a major source of false genetic variability von Goig, Galo A, Blanco, Silvia, Garcia-Basteiro, Alberto L, Comas, Iñaki

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Genome-wide Mapping of Transcriptional Start Sites Defines an Extensive Leaderless Transcriptome in Mycobacterium tuberculosis von Cortes, Teresa, Schubert, Olga T., Rose, Graham, Arnvig, Kristine B., Comas, Iñaki, Aebersold, Ruedi, Young, Douglas B.

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Whole Genome Sequencing Analysis of Intrapatient Microevolution in Mycobacterium tuberculosis: Potential Impact on the Inference of Tuberculosis Transmission von Pérez-Lago, Laura, Comas, Iñaki, Navarro, Yurena, González-Candelas, Fernando, Herranz, Malta, Bouza, Emilio, Garcia-de-Viedma, Darío

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Mycobacterium tuberculosis associated with severe tuberculosis evades cytosolic surveillance systems and modulates IL-1β production von Sousa, Jeremy, Cá, Baltazar, Maceiras, Ana Raquel, Simões-Costa, Luisa, Fonseca, Kaori L., Fernandes, Ana Isabel, Ramos, Angélica, Carvalho, Teresa, Barros, Leandro, Magalhães, Carlos, Chiner-Oms, Álvaro, Machado, Henrique, Veiga, Maria Isabel, Singh, Albel, Pereira, Rui, Amorim, António, Vieira, Jorge, Vieira, Cristina P., Bhatt, Apoorva, Rodrigues, Fernando, Rodrigues, Pedro N. S., Gagneux, Sebastien, Castro, António Gil, Guimarães, João Tiago, Bastos, Helder Novais, Osório, Nuno S., Comas, Iñaki, Saraiva, Margarida

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Whole genomic sequencing based genotyping reveals a specific X3 sublineage restricted to Mexico and related with multidrug resistance von Jiménez-Ruano, Ana Cristina, Madrazo-Moya, Carlos Francisco, Cancino-Muñoz, Irving, Mejía-Ponce, Paulina M., Licona-Cassani, Cuauhtémoc, Comas, Iñaki, Muñiz-Salazar, Raquel, Zenteno-Cuevas, Roberto

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Large genomics datasets shed light on the evolution of the Mycobacterium tuberculosis complex von Chiner-Oms, Álvaro, Comas, Iñaki

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China’s tuberculosis epidemic stems from historical expansion of four strains of Mycobacterium tuberculosis von Liu, Qingyun, Ma, Aijing, Wei, Lanhai, Pang, Yu, Wu, Beibei, Luo, Tao, Zhou, Yang, Zheng, Hong-Xiang, Jiang, Qi, Gan, Mingyu, Zuo, Tianyu, Liu, Mei, Yang, Chongguang, Jin, Li, Comas, Iñaki, Gagneux, Sebastien, Zhao, Yanlin, Pepperell, Caitlin S., Gao, Qian

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Phenogenomics of Mycobacterium abscessus von Comas, Iñaki, Moreno-Molina, Miguel

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Two new rapid SNP-typing methods for classifying Mycobacterium tuberculosis complex into the main phylogenetic lineages von Stucki, David, Malla, Bijaya, Hostettler, Simon, Huna, Thembela, Feldmann, Julia, Yeboah-Manu, Dorothy, Borrell, Sonia, Fenner, Lukas, Comas, Iñaki, Coscollà, Mireia, Gagneux, Sebastien

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Whole genome sequencing analysis to evaluate the influence of T2DM on polymorphisms associated with drug resistance in M. tuberculosis von Bermudez-Hernández, Gustavo Adolfo, Pérez-Martínez, Damián Eduardo, Madrazo-Moya, Carlos Francisco, Cancino-Muéoz, Irving, Comas, Iéaki, Zenteno-Cuevas, Roberto

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