Reconstructing organisms in silico: genome-scale models and their emerging applications von Fang, Xin, Lloyd, Colton J., Palsson, Bernhard O.

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COBRAme: A computational framework for genome-scale models of metabolism and gene expression von Lloyd, Colton J, Ebrahim, Ali, Yang, Laurence, King, Zachary A, Catoiu, Edward, O'Brien, Edward J, Liu, Joanne K, Palsson, Bernhard O

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Learning deep Implicit Fourier Neural Operators (IFNOs) with applications to heterogeneous material modeling von You, Huaiqian, Zhang, Quinn, Ross, Colton J., Lee, Chung-Hao, Yu, Yue

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Machine learning applied to enzyme turnover numbers reveals protein structural correlates and improves metabolic models von Heckmann, David, Lloyd, Colton J., Mih, Nathan, Ha, Yuanchi, Zielinski, Daniel C., Haiman, Zachary B., Desouki, Abdelmoneim Amer, Lercher, Martin J., Palsson, Bernhard O.

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Amplified detection of nucleic acids and proteins using an isothermal proximity CRISPR Cas12a assay von Li, Yongya, Mansour, Hayam, Watson, Colton J. F, Tang, Yanan, MacNeil, Adam J, Li, Feng

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Kinetic profiling of metabolic specialists demonstrates stability and consistency of in vivo enzyme turnover numbers von Heckmann, David, Campeau, Anaamika, Lloyd, Colton J., Phaneuf, Patrick V., Hefner, Ying, Carrillo-Terrazas, Marvic, Feist, Adam M., Gonzalez, David J., Palsson, Bernhard O.

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iML1515, a knowledgebase that computes Escherichia coli traits von Monk, Jonathan M, Lloyd, Colton J, Brunk, Elizabeth, Mih, Nathan, Sastry, Anand, King, Zachary, Takeuchi, Rikiya, Nomura, Wataru, Zhang, Zhen, Mori, Hirotada, Feist, Adam M, Palsson, Bernhard O

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Genome-scale model of metabolism and gene expression provides a multi-scale description of acid stress responses in Escherichia coli von Du, Bin, Yang, Laurence, Lloyd, Colton J, Fang, Xin, Palsson, Bernhard O

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Enantioselective C–H Amination Catalyzed by Nickel Iminyl Complexes Supported by Anionic Bisoxazoline (BOX) Ligands von Dong, Yuyang, Lund, Colton J, Porter, Gerard J, Clarke, Ryan M, Zheng, Shao-Liang, Cundari, Thomas R, Betley, Theodore A

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Laboratory Evolution to Alternating Substrate Environments Yields Distinct Phenotypic and Genetic Adaptive Strategies von Sandberg, Troy E, Lloyd, Colton J, Palsson, Bernhard O, Feist, Adam M

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Impact of Radiation Dose to the Host Immune System on Tumor Control and Survival for Stage III Non-Small Cell Lung Cancer Treated with Definitive Radiation Therapy von Ladbury, Colton J., Rusthoven, Chad G., Camidge, D. Ross, Kavanagh, Brian D., Nath, Sameer K.

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Optimal resource allocation and prolonged dormancy strategies in herbaceous plants von Watts, J. Colton, Tenhumberg, Brigitte, Satake, Akiko

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BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data von Lachance, Jean-Christophe, Lloyd, Colton J, Monk, Jonathan M, Yang, Laurence, Sastry, Anand V, Seif, Yara, Palsson, Bernhard O, Rodrigue, Sébastien, Feist, Adam M, King, Zachary A, Jacques, Pierre-Étienne

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Next-generation genome-scale models for metabolic engineering von King, Zachary A, Lloyd, Colton J, Feist, Adam M, Palsson, Bernhard O

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The effects of intersexual interactions on survival can drive the evolution of female ornaments in the absence of mate limitation von Watts, J Colton, Fitzpatrick, Courtney L

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Biaryl Anion Radical Formation by Potassium Metal Reduction of Aryl Isocyanates and Triaryl Isocyanurates von Peters, Steven J., Kennedy, Sean H., Christiansen, Colton J.

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Diverse C-Terminal Sequences Involved in Flavobacterium johnsoniae Protein Secretion von Kulkarni, Surashree S, Zhu, Yongtao, Brendel, Colton J, McBride, Mark J

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GSK3 inhibition improves skeletal muscle function and whole-body metabolism in male mouse models of Duchenne muscular dystrophy von Marcella, Bianca M., Hockey, Briana L., Braun, Jessica L., Whitley, Kennedy C., Geromella, Mia S., Baranowski, Ryan W., Watson, Colton J. F., Silvera, Sebastian, Hamstra, Sophie I., Wasilewicz, Luc J., Crozier, Robert W. E., Marais, Amélie A. T., Kim, Kun Ho, Lee, Gabsang, Vandenboom, Rene, Roy, Brian D., MacNeil, Adam J., MacPherson, Rebecca E. K., Fajardo, Val A.

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Contemporary sexual selection does not explain variation in male display traits among populations von Watts, Colton, Flynn, Allissa, Tenhumberg, Brigitte, Hebets, Eileen A.

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Colorimetric Polymerase Chain Reaction Enabled by a Fast Light-Activated Substrate Chromogenic Detection Platform von Dong, Tianyu, Mansour, Hayam, Hu, Hao, Wang, Guan A, Watson, Colton J. F, Yousef, Michael, Matamoros, Gabriela, Sanchez, Ana L, MacNeil, Adam J, Wu, Peng, Li, Feng

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