Disordered microbial communities in the upper respiratory tract of cigarette smokers von Charlson, Emily S, Chen, Jun, Custers-Allen, Rebecca, Bittinger, Kyle, Li, Hongzhe, Sinha, Rohini, Hwang, Jennifer, Bushman, Frederic D, Collman, Ronald G

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Power and sample-size estimation for microbiome studies using pairwise distances and PERMANOVA von Kelly, Brendan J, Gross, Robert, Bittinger, Kyle, Sherrill-Mix, Scott, Lewis, James D, Collman, Ronald G, Bushman, Frederic D, Li, Hongzhe

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Topographical Continuity of Bacterial Populations in the Healthy Human Respiratory Tract von CHARLSON, Emily S, BITTINGER, Kyle, HAAS, Andrew R, FITZGERALD, Ayannah S, FRANK, Ian, YADAV, Anjana, BUSHMAN, Frederic D, COLLMAN, Ronald G

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Administration of nucleoside-modified mRNA encoding broadly neutralizing antibody protects humanized mice from HIV-1 challenge von Pardi, Norbert, Secreto, Anthony J., Shan, Xiaochuan, Debonera, Fotini, Glover, Joshua, Yi, Yanjie, Muramatsu, Hiromi, Ni, Houping, Mui, Barbara L., Tam, Ying K., Shaheen, Farida, Collman, Ronald G., Karikó, Katalin, Danet-Desnoyers, Gwenn A., Madden, Thomas D., Hope, Michael J., Weissman, Drew

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Optimizing methods and dodging pitfalls in microbiome research von Kim, Dorothy, Hofstaedter, Casey E, Zhao, Chunyu, Mattei, Lisa, Tanes, Ceylan, Clarke, Erik, Lauder, Abigail, Sherrill-Mix, Scott, Chehoud, Christel, Kelsen, Judith, Conrad, Máire, Collman, Ronald G, Baldassano, Robert, Bushman, Frederic D, Bittinger, Kyle

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Human caspase-4 mediates noncanonical inflammasome activation against gram-negative bacterial pathogens von Casson, Cierra N., Yu, Janet, Reyes, Valeria M., Taschuk, Frances O., Yadav, Anjana, Copenhaver, Alan M., Nguyen, Hieu T., Collman, Ronald G., Shin, Sunny

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Alterations in the respiratory tract microbiome in COVID-19: current observations and potential significance von Merenstein, Carter, Bushman, Frederic D, Collman, Ronald G

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Detection of SARS-CoV-2 RNA using RT-LAMP and molecular beacons von Sherrill-Mix, Scott, Hwang, Young, Roche, Aoife M, Glascock, Abigail, Weiss, Susan R, Li, Yize, Haddad, Leila, Deraska, Peter, Monahan, Caitlin, Kromer, Andrew, Graham-Wooten, Jevon, Taylor, Louis J, Abella, Benjamin S, Ganguly, Arupa, Collman, Ronald G, Van Duyne, Gregory D, Bushman, Frederic D

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Viral Metagenomics Reveal Blooms of Anelloviruses in the Respiratory Tract of Lung Transplant Recipients von Young, J. C., Chehoud, C., Bittinger, K., Bailey, A., Diamond, J. M., Cantu, E., Haas, A. R., Abbas, A., Frye, L., Christie, J. D., Bushman, F. D., Collman, R. G.

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Innate Lymphoid Cells Promote Anatomical Containment of Lymphoid-Resident Commensal Bacteria von Sonnenberg, Gregory F., Monticelli, Laurel A., Alenghat, Theresa, Fung, Thomas C., Hutnick, Natalie A., Kunisawa, Jun, Shibata, Naoko, Grunberg, Stephanie, Sinha, Rohini, Zahm, Adam M., Tardif, Mélanie R., Sathaliyawala, Taheri, Kubota, Masaru, Farber, Donna L., Collman, Ronald G., Shaked, Abraham, Fouser, Lynette A., Weiner, David B., Tessier, Philippe A., Friedman, Joshua R., Kiyono, Hiroshi, Bushman, Frederic D., Chang, Kyong-Mi, Artis, David

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Supraphysiologic control over HIV-1 replication mediated by CD8 T cells expressing a re-engineered CD4-based chimeric antigen receptor von Leibman, Rachel S, Richardson, Max W, Ellebrecht, Christoph T, Maldini, Colby R, Glover, Joshua A, Secreto, Anthony J, Kulikovskaya, Irina, Lacey, Simon F, Akkina, Sarah R, Yi, Yanjie, Shaheen, Farida, Wang, Jianbin, Dufendach, Keith A, Holmes, Michael C, Collman, Ronald G, Payne, Aimee S, Riley, James L

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Evolution of DOHaD: the impact of environmental health sciences von Haugen, A. C., Schug, T. T., Collman, G., Heindel, J. J.

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siRNA-directed inhibition of HIV-1 infection von Novina, Carl D., Murray, Michael F., Dykxhoorn, Derek M., Beresford, Paul J., Riess, Jonathan, Lee, Sang-Kyung, Collman, Ronald G., Lieberman, Judy, Shankar, Premlata, Sharp, Phillip A.

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Assessing bacterial populations in the lung by replicate analysis of samples from the upper and lower respiratory tracts von Charlson, Emily S, Bittinger, Kyle, Chen, Jun, Diamond, Joshua M, Li, Hongzhe, Collman, Ronald G, Bushman, Frederic D

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The Role of the Lung Microbiome in Health and Disease: A National Heart, Lung, and Blood Institute Workshop Report von HUANG, Yvonne J, CHARLSON, Emily S, COLLMAN, Ronald G, COLOMBINI-HATCH, Sandra, MARTINEZ, Fernando D, SENIOR, Robert M

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Signatures of COVID-19 Severity and Immune Response in the Respiratory Tract Microbiome von Merenstein, Carter, Liang, Guanxiang, Whiteside, Samantha A, Cobián-Güemes, Ana G, Merlino, Madeline S, Taylor, Louis J, Glascock, Abigail, Bittinger, Kyle, Tanes, Ceylan, Graham-Wooten, Jevon, Khatib, Layla A, Fitzgerald, Ayannah S, Reddy, Shantan, Baxter, Amy E, Giles, Josephine R, Oldridge, Derek A, Meyer, Nuala J, Wherry, E John, McGinniss, John E, Bushman, Frederic D, Collman, Ronald G

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Improved characterization of medically relevant fungi in the human respiratory tract using next-generation sequencing von Bittinger, Kyle, Charlson, Emily S, Loy, Elizabeth, Shirley, David J, Haas, Andrew R, Laughlin, Alice, Yi, Yanjie, Wu, Gary D, Lewis, James D, Frank, Ian, Cantu, Edward, Diamond, Joshua M, Christie, Jason D, Collman, Ronald G, Bushman, Frederic D

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Multiple Introductions of SARS-CoV-2 Alpha and Delta Variants into White-Tailed Deer in Pennsylvania von Marques, Andrew D, Sherrill-Mix, Scott, Everett, John K, Adhikari, Hriju, Reddy, Shantan, Ellis, Julie C, Zeliff, Haley, Greening, Sabrina S, Cannuscio, Carolyn C, Strelau, Katherine M, Collman, Ronald G, Kelly, Brendan J, Rodino, Kyle G, Bushman, Frederic D, Gagne, Roderick B, Anis, Eman

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Composition and dynamics of the respiratory tract microbiome in intubated patients von Kelly, Brendan J, Imai, Ize, Bittinger, Kyle, Laughlin, Alice, Fuchs, Barry D, Bushman, Frederic D, Collman, Ronald G

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CD4 depletion in SIV-infected macaques results in macrophage and microglia infection with rapid turnover of infected cells von Micci, Luca, Alvarez, Xavier, Iriele, Robin I, Ortiz, Alexandra M, Ryan, Emily S, McGary, Colleen S, Deleage, Claire, McAtee, Brigitte B, He, Tianyu, Apetrei, Cristian, Easley, Kirk, Pahwa, Savita, Collman, Ronald G, Derdeyn, Cynthia A, Davenport, Miles P, Estes, Jacob D, Silvestri, Guido, Lackner, Andrew A, Paiardini, Mirko

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