Bacterial inoculation of Quercus pyrenaica trees alters co‐occurrence patterns but not the composition of the rhizosphere bacteriome in wild conditions von Lasa, Ana V., Fernández‐González, Antonio J., Villadas, Pablo J., Cobo‐Díaz, José F., Fernández‐López, M.

Volltext

High-throughput sequencing reveals genetic determinants associated with antibiotic resistance in Campylobacter spp. from farm-to-fork von Mouftah, Shaimaa F, Cobo-Díaz, José F, Álvarez-Ordóñez, Avelino, Elserafy, Menattallah, Saif, Nehal A, Sadat, Asmaa, El-Shibiny, Ayman, Elhadidy, Mohamed

Volltext

Whole Resistome Analysis in Campylobacter jejuni and C. coli Genomes Available in Public Repositories von Cobo-Díaz, José F., González del Río, Paloma, Álvarez-Ordóñez, Avelino

Volltext

The rhizosphere microbiome of burned holm-oak: potential role of the genus Arthrobacter in the recovery of burned soils von Fernández-González, Antonio J., Martínez-Hidalgo, Pilar, Cobo-Díaz, José F., Villadas, Pablo J., Martínez-Molina, Eustoquio, Toro, Nicolás, Tringe, Susannah G., Fernández-López, Manuel

Volltext

A pilot study revealing host‐associated genetic signatures for source attribution of sporadic Campylobacter jejuni infection in Egypt von Saif, Nehal A., Cobo‐Díaz, José F., Elserafy, Menattallah, El‐Shiekh, Iman, Álvarez‐Ordóñez, Avelino, Mouftah, Shaimaa F., Elhadidy, Mohamed

Volltext

Microbial colonization and resistome dynamics in food processing environments of a newly opened pork cutting industry during 1.5 years of activity von Cobo-Díaz, José F., Alvarez-Molina, Adrián, Alexa, Elena A., Walsh, Calum J., Mencía-Ares, Oscar, Puente-Gómez, Paula, Likotrafiti, Eleni, Fernández-Gómez, Paula, Prieto, Bernardo, Crispie, Fiona, Ruiz, Lorena, González-Raurich, Montserrat, López, Mercedes, Prieto, Miguel, Cotter, Paul, Alvarez-Ordóñez, Avelino

Volltext

The resistome of the food chain: A One Health perspective von Fernández‐Trapote, Elena, Oliveira, Marcia, Cobo‐Díaz, José F., Alvarez‐Ordóñez, Avelino

Volltext

In-depth characterization of food and environmental microbiomes across different meat processing plants von Barcenilla, Coral, Cobo-Díaz, José F, Puente, Alba, Valentino, Vincenzo, De Filippis, Francesca, Ercolini, Danilo, Carlino, Niccolò, Pinto, Federica, Segata, Nicola, Prieto, Miguel, López, Mercedes, Alvarez-Ordóñez, Avelino

Volltext

The detailed analysis of the microbiome and resistome of artisanal blue-veined cheeses provides evidence on sources and patterns of succession linked with quality and safety traits von Alexa, Elena A, Cobo-Díaz, José F, Renes, Erica, O Callaghan, Tom F, Kilcawley, Kieran, Mannion, David, Skibinska, Iwona, Ruiz, Lorena, Margolles, Abelardo, Fernández-Gómez, Paula, Alvarez-Molina, Adrián, Puente-Gómez, Paula, Crispie, Fiona, López, Mercedes, Prieto, Miguel, Cotter, Paul D, Alvarez-Ordóñez, Avelino

Volltext

Unraveling the emergence and population diversity of Listeria monocytogenes in a newly built meat facility through whole genome sequencing von Alvarez-Molina, Adrián, Cobo-Díaz, José F., López, Mercedes, Prieto, Miguel, de Toro, María, Alvarez-Ordóñez, Avelino

Volltext

Evidence of virulence and antibiotic resistance genes from the microbiome mapping in minimally processed vegetables producing facilities von Valentino, Vincenzo, Sequino, Giuseppina, Cobo-Díaz, José F., Álvarez-Ordóñez, Avelino, De Filippis, Francesca, Ercolini, Danilo

Volltext

Microbiome mapping in dairy industry reveals new species and genes for probiotic and bioprotective activities von De Filippis, Francesca, Valentino, Vincenzo, Yap, Min, Cabrera-Rubio, Raul, Barcenilla, Coral, Carlino, Niccolò, Cobo-Díaz, José F., Quijada, Narciso Martín, Calvete-Torre, Inés, Ruas-Madiedo, Patricia, Sabater, Carlos, Sequino, Giuseppina, Pasolli, Edoardo, Wagner, Martin, Margolles, Abelardo, Segata, Nicola, Álvarez-Ordóñez, Avelino, Cotter, Paul D., Ercolini, Danilo

Volltext

Inter-facility characterization of bacteria in seafood processing plants: Exploring potential reservoirs of spoilage organisms and the resistome von Corral-Jara, Karla Fabiola, Skírnisdóttir, Sigurlaug, Knobloch, Stephen, Briem, Helgi, Cobo-Díaz, José F., Carlino, Niccolò, Bergsten, Pauline, Armanini, Federica, Asnicar, Francesco, Pinto, Federica, Alvarez-Ordóñez, Avelino, Segata, Nicola, Marteinsson, Viggó þór

Volltext

A novel metabarcoding approach to investigate Fusarium species composition in soil and plant samples von Cobo-Díaz, José F, Baroncelli, Riccardo, Le Floch, Gaétan, Picot, Adeline

Volltext

Influence of Maize Residues in Shaping Soil Microbiota and Fusarium spp. Communities von Cobo-Díaz, José F., Legrand, Fabienne, Le Floch, Gaétan, Picot, Adeline

Volltext

High pressure processing at the early stages of ripening enhances the safety and quality of dry fermented sausages elaborated with or without starter culture von Dučić, Miroslav, Barcenilla, Coral, Cobo-Díaz, José F., López, Mercedes, Álvarez-Ordóñez, Avelino, Prieto, Miguel

Volltext

Metagenomic comparison of the faecal and environmental resistome on Irish commercial pig farms with and without zinc oxide and antimicrobial usage von Ekhlas, Daniel, Cobo Díaz, José F, Cabrera-Rubio, Raúl, Alexa, Elena, Ortiz Sanjuán, Juan M, Garcia Manzanilla, Edgar, Crispie, Fiona, Cotter, Paul D, Leonard, Finola C, Argüello, Héctor, Burgess, Catherine M

Volltext

Novel methods of microbiome analysis in the food industry von Sabater, Carlos, Cobo-Díaz, José F., Álvarez-Ordóñez, Avelino, Ruas-Madiedo, Patricia, Ruiz, Lorena, Margolles, Abelardo

Volltext

Application of genomics and metagenomics to improve food safety based on an enhanced characterisation of antimicrobial resistance von Pennone, Vincenzo, Cobo-Díaz, José F, Prieto, Miguel, Alvarez-Ordóñez, Avelino

Volltext

Stress resistance associated with multi-host transmission and enhanced biofilm formation at 42 °C among hyper-aerotolerant generalist Campylobacter jejuni von Mouftah, Shaimaa F., Cobo-Díaz, José F., Álvarez-Ordóñez, Avelino, Mousa, Ahmed, Calland, Jessica K., Pascoe, Ben, Sheppard, Samuel K., Elhadidy, Mohamed

Volltext