Re‐thinking miRNA‐mRNA interactions: Intertwining issues confound target discovery von Cloonan, Nicole

Volltext

Mechanically-sensitive miRNAs bias human mesenchymal stem cell fate via mTOR signalling von Frith, Jessica E., Kusuma, Gina D., Carthew, James, Li, Fanyi, Cloonan, Nicole, Gomez, Guillermo A., Cooper-White, Justin J.

Volltext

miR-139-5p is a regulator of metastatic pathways in breast cancer von Krishnan, Keerthana, Steptoe, Anita L, Martin, Hilary C, Pattabiraman, Diwakar R, Nones, Katia, Waddell, Nic, Mariasegaram, Mythily, Simpson, Peter T, Lakhani, Sunil R, Vlassov, Alexander, Grimmond, Sean M, Cloonan, Nicole

Volltext

MicroRNA-182-5p targets a network of genes involved in DNA repair von Krishnan, Keerthana, Steptoe, Anita L, Martin, Hilary C, Wani, Shivangi, Nones, Katia, Waddell, Nic, Mariasegaram, Mythily, Simpson, Peter T, Lakhani, Sunil R, Gabrielli, Brian, Vlassov, Alexander, Cloonan, Nicole, Grimmond, Sean M

Volltext

Long Noncoding RNAs CUPID1 and CUPID2 Mediate Breast Cancer Risk at 11q13 by Modulating the Response to DNA Damage von Betts, Joshua A., Moradi Marjaneh, Mahdi, Al-Ejeh, Fares, Lim, Yi Chieh, Shi, Wei, Sivakumaran, Haran, Tropée, Romain, Patch, Ann-Marie, Clark, Michael B., Bartonicek, Nenad, Wiegmans, Adrian P., Hillman, Kristine M., Kaufmann, Susanne, Bain, Amanda L., Gloss, Brian S., Crawford, Joanna, Kazakoff, Stephen, Wani, Shivangi, Wen, Shu W., Day, Bryan, Möller, Andreas, Cloonan, Nicole, Pearson, John, Brown, Melissa A., Mercer, Timothy R., Waddell, Nicola, Khanna, Kum Kum, Dray, Eloise, Dinger, Marcel E., Edwards, Stacey L., French, Juliet D.

Volltext

A global role for KLF1 in erythropoiesis revealed by ChIP-seq in primary erythroid cells von Tallack, Michael R, Whitington, Tom, Yuen, Wai Shan, Wainwright, Elanor N, Keys, Janelle R, Gardiner, Brooke B, Nourbakhsh, Ehsan, Cloonan, Nicole, Grimmond, Sean M, Bailey, Timothy L, Perkins, Andrew C

Volltext

An epigenomic roadmap to induced pluripotency reveals DNA methylation as a reprogramming modulator von Lee, Dong-Sung, Shin, Jong-Yeon, Tonge, Peter D., Puri, Mira C., Lee, Seungbok, Park, Hansoo, Lee, Won-Chul, Hussein, Samer M. I., Bleazard, Thomas, Yun, Ji-Young, Kim, Jihye, Li, Mira, Cloonan, Nicole, Wood, David, Clancy, Jennifer L., Mosbergen, Rowland, Yi, Jae-Hyuk, Yang, Kap-Seok, Kim, Hyungtae, Rhee, Hwanseok, Wells, Christine A., Preiss, Thomas, Grimmond, Sean M., Rogers, Ian M., Nagy, Andras, Seo, Jeong-Sun

Volltext

Hematopoietic stem and progenitor cell-restricted Cdx2 expression induces transformation to myelodysplasia and acute leukemia von Vu, Therese, Straube, Jasmin, Porter, Amy H., Bywater, Megan, Song, Axia, Ling, Victoria, Cooper, Leanne, Pali, Gabor, Bruedigam, Claudia, Jacquelin, Sebastien, Green, Joanne, Magor, Graham, Perkins, Andrew, Chalk, Alistair M., Walkley, Carl R., Heidel, Florian H., Mukhopadhyay, Pamela, Cloonan, Nicole, Gröschel, Stefan, Mallm, Jan-Philipp, Fröhling, Stefan, Scholl, Claudia, Lane, Steven W.

Volltext

The uniqueome: a mappability resource for short-tag sequencing von KOEHLER, Ryan, ISSAC, Hadar, CLOONAN, Nicole, GRIMMOND, Sean M

Volltext

Minor class splicing shapes the zebrafish transcriptome during development von Markmiller, Sebastian, Cloonan, Nicole, Lardelli, Rea M., Doggett, Karen, Keightley, Maria-Cristina, Boglev, Yeliz, Trotter, Andrew J., Ng, Annie Y., Wilkins, Simon J., Verkade, Heather, Ober, Elke A., Field, Holly A., Grimmond, Sean M., Lieschke, Graham J., Stainier, Didier Y. R., Heath, Joan K.

Volltext

Ssb1 and Ssb2 cooperate to regulate mouse hematopoietic stem and progenitor cells by resolving replicative stress von Shi, Wei, Vu, Therese, Boucher, Didier, Biernacka, Anna, Nde, Jules, Pandita, Raj K., Straube, Jasmin, Boyle, Glen M., Al-Ejeh, Fares, Nag, Purba, Jeffery, Jessie, Harris, Janelle L., Bain, Amanda L., Grzelak, Marta, Skrzypczak, Magdalena, Mitra, Abhishek, Dojer, Norbert, Crosetto, Nicola, Cloonan, Nicole, Becherel, Olivier J., Finnie, John, Skaar, Jeffrey R., Walkley, Carl R., Pandita, Tej K., Rowicka, Maga, Ginalski, Krzysztof, Lane, Steven W., Khanna, Kum Kum

Volltext

Caveolin‐1‐driven membrane remodelling regulates hnRNPK‐mediated exosomal microRNA sorting in cancer von Robinson, Harley, Ruelcke, Jayde E., Lewis, Amanda, Bond, Charles S., Fox, Archa H., Bharti, Vandhana, Wani, Shivangi, Cloonan, Nicole, Lai, Andrew, Margolin, David, Li, Li, Salomon, Carlos, Richards, Renée S., Farrell, Aine, Gardiner, Robert A., Parton, Robert G., Cristino, Alexandre S., Hill, Michelle M.

Volltext

SnapShot-Seq: a method for extracting genome-wide, in vivo mRNA dynamics from a single total RNA sample von Gray, Jesse M, Harmin, David A, Boswell, Sarah A, Cloonan, Nicole, Mullen, Thomas E, Ling, Joseph J, Miller, Nimrod, Kuersten, Scott, Ma, Yong-Chao, McCarroll, Steven A, Grimmond, Sean M, Springer, Michael

Volltext

Imperfect centered miRNA binding sites are common and can mediate repression of target mRNAs von Martin, Hilary C, Wani, Shivangi, Steptoe, Anita L, Krishnan, Keerthana, Nones, Katia, Nourbakhsh, Ehsan, Vlassov, Alexander, Grimmond, Sean M, Cloonan, Nicole

Volltext

Shutdown of HIV-1 Transcription in T Cells by Nullbasic, a Mutant Tat Protein von Jin, Hongping, Li, Dongsheng, Sivakumaran, Haran, Lor, Mary, Rustanti, Lina, Cloonan, Nicole, Wani, Shivangi, Harrich, David

Volltext

Multiple interaction nodes define the postreplication repair response to UV‐induced DNA damage that is defective in melanomas and correlated with UV signature mutation load von Pavey, Sandra, Pinder, Alex, Fernando, Winnie, D’Arcy, Nicholas, Matigian, Nicholas, Skalamera, Dubravka, Lê Cao, Kim‐Anh, Loo‐Oey, Dorothy, Hill, Michelle M., Stark, Mitchell, Kimlin, Michael, Burgess, Andrew, Cloonan, Nicole, Sturm, Richard A., Gabrielli, Brian

Volltext

Identification of Human Embryonic Stem Cell Surface Markers by Combined Membrane‐Polysome Translation State Array Analysis and Immunotranscriptional Profiling von Kolle, Gabriel, Ho, Mirabelle, Zhou, Qi, Chy, Hun S., Krishnan, Keerthana, Cloonan, Nicole, Bertoncello, Ivan, Laslett, Andrew L., Grimmond, Sean M.

Volltext

Unique molecular profile of exosomes derived from primary human proximal tubular epithelial cells under diseased conditions von Wang, Xiangju, Wilkinson, Ray, Kildey, Katrina, Potriquet, Jeremy, Mulvenna, Jason, Lobb, Richard J., Möller, Andreas, Cloonan, Nicole, Mukhopadhyay, Pamela, Kassianos, Andrew J., Healy, Helen

Volltext

Recommendations for Accurate Resolution of Gene and Isoform Allele-Specific Expression in RNA-Seq Data von Wood, David L A, Nones, Katia, Steptoe, Anita, Christ, Angelika, Harliwong, Ivon, Newell, Felicity, Bruxner, Timothy J C, Miller, David, Cloonan, Nicole, Grimmond, Sean M

Volltext

Refining transcriptional programs in kidney development by integration of deep RNA-sequencing and array-based spatial profiling von Thiagarajan, Rathi D, Cloonan, Nicole, Gardiner, Brooke B, Mercer, Tim R, Kolle, Gabriel, Nourbakhsh, Ehsan, Wani, Shivangi, Tang, Dave, Krishnan, Keerthana, Georgas, Kylie M, Rumballe, Bree A, Chiu, Han S, Steen, Jason A, Mattick, John S, Little, Melissa H, Grimmond, Sean M

Volltext