Exploring TCGA Pan-Cancer Data at the UCSC Cancer Genomics Browser von Cline, Melissa S., Craft, Brian, Swatloski, Teresa, Goldman, Mary, Ma, Singer, Haussler, David, Zhu, Jingchun

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The UCSC Genome Browser database: 2024 update von Raney, Brian J, Barber, Galt P, Benet-Pagès, Anna, Casper, Jonathan, Clawson, Hiram, Cline, Melissa S, Diekhans, Mark, Fischer, Clayton, Navarro Gonzalez, Jairo, Hickey, Glenn, Hinrichs, Angie S, Kuhn, Robert M, Lee, Brian T, Lee, Christopher M, Le Mercier, Phillipe, Miga, Karen H, Nassar, Luis R, Nejad, Parisa, Paten, Benedict, Perez, Gerardo, Schmelter, Daniel, Speir, Matthew L, Wick, Brittney D, Zweig, Ann S, Haussler, David, Kent, W James, Haeussler, Maximilian

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The UCSC Genome Browser database: extensions and updates 2013 von Meyer, Laurence R, Zweig, Ann S, Hinrichs, Angie S, Karolchik, Donna, Kuhn, Robert M, Wong, Matthew, Sloan, Cricket A, Rosenbloom, Kate R, Roe, Greg, Rhead, Brooke, Raney, Brian J, Pohl, Andy, Malladi, Venkat S, Li, Chin H, Lee, Brian T, Learned, Katrina, Kirkup, Vanessa, Hsu, Fan, Heitner, Steve, Harte, Rachel A, Haeussler, Maximilian, Guruvadoo, Luvina, Goldman, Mary, Giardine, Belinda M, Fujita, Pauline A, Dreszer, Timothy R, Diekhans, Mark, Cline, Melissa S, Clawson, Hiram, Barber, Galt P, Haussler, David, Kent, W James

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Using bioinformatics to predict the functional impact of SNVs von CLINE, Melissa S, KARCHIN, Rachel

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Integration of biological networks and gene expression data using Cytoscape von Ideker, Trey, Cline, Melissa S, Smoot, Michael, Cerami, Ethan, Kuchinsky, Allan, Landys, Nerius, Workman, Chris, Christmas, Rowan, Avila-Campilo, Iliana, Creech, Michael, Gross, Benjamin, Hanspers, Kristina, Isserlin, Ruth, Kelley, Ryan, Killcoyne, Sarah, Lotia, Samad, Maere, Steven, Morris, John, Ono, Keiichiro, Pavlovic, Vuk, Pico, Alexander R, Vailaya, Aditya, Wang, Peng-Liang, Adler, Annette, Conklin, Bruce R, Hood, Leroy, Kuiper, Martin, Sander, Chris, Schmulevich, Ilya, Schwikowski, Benno, Warner, Guy J, Bader, Gary D

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Aberrant alternative splicing and extracellular matrix gene expression in mouse models of myotonic dystrophy von Osborne, Robert J, Shiue, Lily, Swanson, Maurice S, Du, Hongqing, Cline, Melissa S, Tuttle, Daniel L, Clark, Tyson A, Donohue, John Paul, Thornton, Charles A, Hall, Megan P, Ares, Manuel

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Quaking and PTB control overlapping splicing regulatory networks during muscle cell differentiation von Hall, Megan P, Nagel, Roland J, Fagg, W Samuel, Shiue, Lily, Cline, Melissa S, Perriman, Rhonda J, Donohue, John Paul, Ares, Jr, Manuel

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Alternative splicing regulates mouse embryonic stem cell pluripotency and differentiation von Salomonis, Nathan, Schlieve, Christopher R, Pereira, Laura, Wahlquist, Christine, Colas, Alexandre, Zambon, Alexander C, Vranizan, Karen, Spindler, Matthew J, Pico, Alexander R, Cline, Melissa S, Clark, Tyson A, Williams, Alan, Blume, John E, Samal, Eva, Mercola, Mark, Merrill, Bradley J, Conklin, Bruce R

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Rbfox1 downregulation and altered calpain 3 splicing by FRG1 in a mouse model of Facioscapulohumeral muscular dystrophy (FSHD) von Pistoni, Mariaelena, Shiue, Lily, Cline, Melissa S, Bortolanza, Sergia, Neguembor, Maria Victoria, Xynos, Alexandros, Ares, Jr, Manuel, Gabellini, Davide

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International federation of genomic medicine databases using GA4GH standards von Thorogood, Adrian, Rehm, Heidi L., Goodhand, Peter, Page, Angela J.H., Joly, Yann, Baudis, Michael, Rambla, Jordi, Navarro, Arcadi, Nyronen, Tommi H., Linden, Mikael, Dove, Edward S., Fiume, Marc, Brudno, Michael, Cline, Melissa S., Birney, Ewan

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Unusual intron conservation near tissue-regulated exons found by splicing microarrays von Sugnet, Charles W, Srinivasan, Karpagam, Clark, Tyson A, O'Brien, Georgeann, Cline, Melissa S, Wang, Hui, Williams, Alan, Kulp, David, Blume, John E, Haussler, David, Ares, Jr, Manuel

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Federated Analysis for Privacy-Preserving Data Sharing: A Technical and Legal Primer von Casaletto, James, Bernier, Alexander, McDougall, Robyn, Cline, Melissa S

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The UCSC Genome Browser database: 2014 update von Karolchik, Donna, Barber, Galt P, Casper, Jonathan, Clawson, Hiram, Cline, Melissa S, Diekhans, Mark, Dreszer, Timothy R, Fujita, Pauline A, Guruvadoo, Luvina, Haeussler, Maximilian, Harte, Rachel A, Heitner, Steve, Hinrichs, Angie S, Learned, Katrina, Lee, Brian T, Li, Chin H, Raney, Brian J, Rhead, Brooke, Rosenbloom, Kate R, Sloan, Cricket A, Speir, Matthew L, Zweig, Ann S, Haussler, David, Kuhn, Robert M, Kent, W James

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UCSC Genome Browser database: update 2011 von Fujita, Pauline A, Rhead, Brooke, Zweig, Ann S, Hinrichs, Angie S, Karolchik, Donna, Cline, Melissa S, Goldman, Mary, Barber, Galt P, Clawson, Hiram, Coelho, Antonio, Diekhans, Mark, Dreszer, Timothy R, Giardine, Belinda M, Harte, Rachel A, Hillman-Jackson, Jennifer, Hsu, Fan, Kirkup, Vanessa, Kuhn, Robert M, Learned, Katrina, Li, Chin H, Meyer, Laurence R, Pohl, Andy, Raney, Brian J, Rosenbloom, Kate R, Smith, Kayla E, Haussler, David, Kent, W. James

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The UCSC Genome Browser database: extensions and updates 2011 von Dreszer, Timothy R., Karolchik, Donna, Zweig, Ann S., Hinrichs, Angie S., Raney, Brian J., Kuhn, Robert M., Meyer, Laurence R., Wong, Mathew, Sloan, Cricket A., Rosenbloom, Kate R., Roe, Greg, Rhead, Brooke, Pohl, Andy, Malladi, Venkat S., Li, Chin H., Learned, Katrina, Kirkup, Vanessa, Hsu, Fan, Harte, Rachel A., Guruvadoo, Luvina, Goldman, Mary, Giardine, Belinda M., Fujita, Pauline A., Diekhans, Mark, Cline, Melissa S., Clawson, Hiram, Barber, Galt P., Haussler, David, James Kent, W.

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Evidence-based recommendations for gene-specific ACMG/AMP variant classification from the ClinGen ENIGMA BRCA1 and BRCA2 Variant Curation Expert Panel von Parsons, Michael T., de la Hoya, Miguel, Richardson, Marcy E., Tudini, Emma, Anderson, Michael, Berkofsky-Fessler, Windy, Caputo, Sandrine M., Chan, Raymond C., Cline, Melissa S., Feng, Bing-Jian, Fortuno, Cristina, Gomez-Garcia, Encarna, Hadler, Johanna, Hiraki, Susan, Holdren, Megan, Houdayer, Claude, Hruska, Kathleen, James, Paul, Karam, Rachid, Leong, Huei San, Martins, Alexandra, Mensenkamp, Arjen R., Monteiro, Alvaro N., Nathan, Vaishnavi, O'Connor, Robert, Pedersen, Inge Sokilde, Pesaran, Tina, Radice, Paolo, Schmidt, Gunnar, Southey, Melissa, Tavtigian, Sean, Thompson, Bryony A., Toland, Amanda E., Turnbull, Clare, Vogel, Maartje J., Weyandt, Jamie, Wiggins, George A.R., Zec, Lauren, Couch, Fergus J., Walker, Logan C., Vreeswijk, Maaike P.G., Goldgar, David E., Spurdle, Amanda B.

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Affy exon tissues: exon levels in normal tissues in human, mouse and rat von Pohl, Andrew A., Sugnet, Charles W., Clark, Tyson A., Smith, Kayla, Fujita, Pauline A., Cline, Melissa S.

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ENCODE whole-genome data in the UCSC Genome Browser: update 2012 von Rosenbloom, Kate R., Dreszer, Timothy R., Long, Jeffrey C., Malladi, Venkat S., Sloan, Cricket A., Raney, Brian J., Cline, Melissa S., Karolchik, Donna, Barber, Galt P., Clawson, Hiram, Diekhans, Mark, Fujita, Pauline A., Goldman, Mary, Gravell, Robert C., Harte, Rachel A., Hinrichs, Angie S., Kirkup, Vanessa M., Kuhn, Robert M., Learned, Katrina, Maddren, Morgan, Meyer, Laurence R., Pohl, Andy, Rhead, Brooke, Wong, Matthew C., Zweig, Ann S., Haussler, David, Kent, W. James

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Human genetics special issue on computational molecular medicine von Karchin, Rachel, Cline, Melissa S.

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ENCODE whole-genome data in the UCSC genome browser (2011 update) von Raney, Brian J, Cline, Melissa S, Rosenbloom, Kate R, Dreszer, Timothy R, Learned, Katrina, Barber, Galt P, Meyer, Laurence R, Sloan, Cricket A, Malladi, Venkat S, Roskin, Krishna M, Suh, Bernard B, Hinrichs, Angie S, Clawson, Hiram, Zweig, Ann S, Kirkup, Vanessa, Fujita, Pauline A, Rhead, Brooke, Smith, Kayla E, Pohl, Andy, Kuhn, Robert M, Karolchik, Donna, Haussler, David, Kent, W. James

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