Rapid and precise alignment of raw reads against redundant databases with KMA von Clausen, Philip T L C, Aarestrup, Frank M, Lund, Ole

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CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic data von Marcelino, Vanessa R, Clausen, Philip T L C, Buchmann, Jan P, Wille, Michelle, Iredell, Jonathan R, Meyer, Wieland, Lund, Ole, Sorrell, Tania C, Holmes, Edward C

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Scaling neighbor joining to one million taxa with dynamic and heuristic neighbor joining von Clausen, Philip T L C

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Benchmarking of methods for identification of antimicrobial resistance genes in bacterial whole genome data von Clausen, Philip T L C, Zankari, Ea, Aarestrup, Frank M, Lund, Ole

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Small Wind and Hydrokinetic Turbines von Clausen, Philip, Whale, Jonathan, Wood, David

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LRE-Finder, a Web tool for detection of the 23S rRNA mutations and the optrA, cfr, cfr(B) and poxtA genes encoding linezolid resistance in enterococci from whole-genome sequences von Hasman, Henrik, Clausen, Philip T L C, Kaya, Hülya, Hansen, Frank, Knudsen, Jenny Dahl, Wang, Mikala, Holzknecht, Barbara Juliane, Samulioniené, Jurgita, Røder, Bent L, Frimodt-Møller, Niels, Lund, Ole, Hammerum, Anette M

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ARGprofiler—a pipeline for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets von Martiny, Hannah-Marie, Pyrounakis, Nikiforos, Petersen, Thomas N, Lukjančenko, Oksana, Aarestrup, Frank M, Clausen, Philip T L C, Munk, Patrick

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Metaphylogenetic analysis of global sewage reveals that bacterial strains associated with human disease show less degree of geographic clustering von Ahrenfeldt, Johanne, Waisi, Madina, Loft, Isabella C., Clausen, Philip T. L. C., Allesøe, Rosa, Szarvas, Judit, Hendriksen, Rene S., Aarestrup, Frank M., Lund, Ole

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Critical Assessment of Metagenome Interpretation: the second round of challenges von Meyer, Fernando, Fritz, Adrian, Deng, Zhi-Luo, Koslicki, David, Lesker, Till Robin, Gurevich, Alexey, Robertson, Gary, Alser, Mohammed, Antipov, Dmitry, Beghini, Francesco, Bertrand, Denis, Brito, Jaqueline J., Brown, C. Titus, Buchmann, Jan, Buluç, Aydin, Chen, Bo, Chikhi, Rayan, Clausen, Philip T. L. C., Dabrowski, Piotr Wojciech, Darling, Aaron E., Egan, Rob, Eskin, Eleazar, Georganas, Evangelos, Goltsman, Eugene, Gray, Melissa A., Hansen, Lars Hestbjerg, Hofmeyr, Steven, Huang, Pingqin, Irber, Luiz, Jia, Huijue, Jørgensen, Tue Sparholt, Kieser, Silas D., Klemetsen, Terje, Kola, Axel, Kolmogorov, Mikhail, Kwan, Jason, Lemaitre, Claire, Li, Chenhao, Limasset, Antoine, Malcher-Miranda, Fabio, Mangul, Serghei, Marcelino, Vanessa R., Marchet, Camille, Marijon, Pierre, Meleshko, Dmitry, Mende, Daniel R., Milanese, Alessio, Nagarajan, Niranjan, Nissen, Jakob, Nurk, Sergey, Oliker, Leonid, Paoli, Lucas, Peterlongo, Pierre, Piro, Vitor C., Porter, Jacob S., Rasmussen, Simon, Rees, Evan R., Reinert, Knut, Renard, Bernhard, Robertsen, Espen Mikal, Rosen, Gail L., Ruscheweyh, Hans-Joachim, Sarwal, Varuni, Segata, Nicola, Seiler, Enrico, Shi, Lizhen, Sun, Fengzhu, Sunagawa, Shinichi, Sørensen, Søren Johannes, Thomas, Ashleigh, Tong, Chengxuan, Trajkovski, Mirko, Tremblay, Julien, Uritskiy, Gherman, Vicedomini, Riccardo, Wang, Zhengyang, Wang, Ziye, Wang, Zhong, Warren, Andrew, Willassen, Nils Peder, Yelick, Katherine, You, Ronghui, Zeller, Georg, Zhao, Zhengqiao, Zhu, Shanfeng, Zhu, Jie, Garrido-Oter, Ruben, Gastmeier, Petra, Hacquard, Stephane, Häußler, Susanne, Khaledi, Ariane, Maechler, Friederike, Mesny, Fantin, Radutoiu, Simona, Schulze-Lefert, Paul, Smit, Nathiana, Strowig, Till, Bremges, Andreas, Sczyrba, Alexander, McHardy, Alice Carolyn

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An investigation of the impact of wind speed and turbulence on small wind turbine operation and fatigue loads von KC, Anup, Whale, Jonathan, Evans, Samuel P., Clausen, Philip D.

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SourceFinder: a Machine-Learning-Based Tool for Identification of Chromosomal, Plasmid, and Bacteriophage Sequences from Assemblies von Aytan-Aktug, Derya, Grigorjev, Vladislav, Szarvas, Judit, Clausen, Philip T L C, Munk, Patrick, Nguyen, Marcus, Davis, James J, Aarestrup, Frank M, Lund, Ole

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The remarkable convergence of skull shape in crocodilians and toothed whales von McCurry, Matthew R., Evans, Alistair R., Fitzgerald, Erich M. G., Adams, Justin W., Clausen, Philip D., McHenry, Colin R.

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PlasmidHostFinder: Prediction of Plasmid Hosts Using Random Forest von Aytan-Aktug, Derya, Clausen, Philip T L C, Szarvas, Judit, Munk, Patrick, Otani, Saria, Nguyen, Marcus, Davis, James J, Lund, Ole, Aarestrup, Frank M

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Automated download and clean-up of family-specific databases for kmer-based virus identification von Allesøe, Rosa L, Lemvigh, Camilla K, Phan, My V T, Clausen, Philip T L C, Florensa, Alfred F, Koopmans, Marion P G, Lund, Ole, Cotten, Matthew

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Improved Resistance Prediction in Mycobacterium tuberculosis by Better Handling of Insertions and Deletions, Premature Stop Codons, and Filtering of Non-informative Sites von Johnsen, Camilla Hundahl, Clausen, Philip T. L. C., Aarestrup, Frank M., Lund, Ole

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Supermodeled sabercat, predatory behavior in Smilodon fatalis revealed by high-resolution 3D computer simulation von McHenry, Colin R, Wroe, Stephen, Clausen, Philip D, Moreno, Karen, Cunningham, Eleanor

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MINTyper: an outbreak-detection method for accurate and rapid SNP typing of clonal clusters with noisy long reads von Hallgren, Malte B, Overballe-Petersen, Søren, Lund, Ole, Hasman, Henrik, Clausen, Philip T L C

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Computer simulation of feeding behaviour in the thylacine and dingo as a novel test for convergence and niche overlap von Wroe, Stephen, Clausen, Philip, McHenry, Colin, Moreno, Karen, Cunningham, Eleanor

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Nanopore sequencing technology for clinical diagnosis of infectious diseases where laboratory capacity is meager: A case report von Kumburu, Happiness H., Shayo, Mariana, van Zwetslaar, Marco, Njau, Judith, Kuchaka, Davis J., Ignas, Ignas P., Wadugu, Boaz, Kasworm, Robert, Masaki, Lazaro J., Hallgren, Malte B., Clausen, Philip T.L.C., Mmbaga, Blandina Theophil, Aarestrup, Frank M., Sonda, Tolbert B.

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Finite element analysis of three patterns of internal fixation of fractures of the mandibular condyle von Aquilina, Peter, Chamoli, Uphar, Parr, William C.H, Clausen, Philip D, Wroe, Stephen

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