BACPHLIP: predicting bacteriophage lifestyle from conserved protein domains von Hockenberry, Adam J, Wilke, Claus O

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Maximum allowed solvent accessibilites of residues in proteins von Tien, Matthew Z, Meyer, Austin G, Sydykova, Dariya K, Spielman, Stephanie J, Wilke, Claus O

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A universal trend of reduced mRNA stability near the translation-initiation site in prokaryotes and eukaryotes von Gu, Wanjun, Zhou, Tong, Wilke, Claus O

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Mistranslation-Induced Protein Misfolding as a Dominant Constraint on Coding-Sequence Evolution von Drummond, D. Allan, Wilke, Claus O.

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Systematic humanization of yeast genes reveals conserved functions and genetic modularity von Kachroo, Aashiq H., Laurent, Jon M., Yellman, Christopher M., Meyer, Austin G., Wilke, Claus O., Marcotte, Edward M.

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Functional Sites Induce Long-Range Evolutionary Constraints in Enzymes von Jack, Benjamin R, Meyer, Austin G, Echave, Julian, Wilke, Claus O

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The evolutionary consequences of erroneous protein synthesis von Wilke, Claus O, Allan Drummond, D

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Pyvolve: A Flexible Python Module for Simulating Sequences along Phylogenies von Spielman, Stephanie J, Wilke, Claus O

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Distinct horizontal transfer mechanisms for type I and type V CRISPR-associated transposons von Hu, Kuang, Chou, Chia-Wei, Wilke, Claus O., Finkelstein, Ilya J.

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A computational model for bacteriophage ϕX174 gene expression von Hill, Alexis M, Ingle, Tanvi A, Wilke, Claus O

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Humanization of yeast genes with multiple human orthologs reveals functional divergence between paralogs von Laurent, Jon M, Garge, Riddhiman K, Teufel, Ashley I, Wilke, Claus O, Kachroo, Aashiq H, Marcotte, Edward M

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Quasispecies theory in the context of population genetics von Wilke, Claus O

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Bringing molecules back into molecular evolution von Wilke, Claus O

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Evolutionary paths of least resistance von Wilke, Claus O.

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Limitations of alignment-free tools in total RNA-seq quantification von Wu, Douglas C, Yao, Jun, Ho, Kevin S, Lambowitz, Alan M, Wilke, Claus O

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Geometric Constraints Dominate the Antigenic Evolution of Influenza H3N2 Hemagglutinin von Meyer, Austin G, Wilke, Claus O

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Why Highly Expressed Proteins Evolve Slowly von Drummond, D. Allan, Bloom, Jesse D., Adami, Christoph, Wilke, Claus O., Arnold, Frances H., Ayala, Francisco J.

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A single determinant dominates the rate of yeast protein evolution von Drummond, D Allan, Raval, Alpan, Wilke, Claus O

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Experiments on the role of deleterious mutations as stepping stones in adaptive evolution von Covert, 3rd, Arthur W, Lenski, Richard E, Wilke, Claus O, Ofria, Charles

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Single-Cell Virology: On-Chip Investigation of Viral Infection Dynamics von Guo, Feng, Li, Sixing, Caglar, Mehmet Umut, Mao, Zhangming, Liu, Wu, Woodman, Andrew, Arnold, Jamie J., Wilke, Claus O., Huang, Tony Jun, Cameron, Craig E.

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