Sunbeam: an extensible pipeline for analyzing metagenomic sequencing experiments von Clarke, Erik L, Taylor, Louis J, Zhao, Chunyu, Connell, Andrew, Lee, Jung-Jin, Fett, Bryton, Bushman, Frederic D, Bittinger, Kyle

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Lack of detection of a human placenta microbiome in samples from preterm and term deliveries von Leiby, Jacob S, McCormick, Kevin, Sherrill-Mix, Scott, Clarke, Erik L, Kessler, Lyanna R, Taylor, Louis J, Hofstaedter, Casey E, Roche, Aoife M, Mattei, Lisa M, Bittinger, Kyle, Elovitz, Michal A, Leite, Rita, Parry, Samuel, Bushman, Frederic D

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Microbial Lineages in Sarcoidosis. A Metagenomic Analysis Tailored for Low-Microbial Content Samples von Clarke, Erik L, Lauder, Abigail P, Hofstaedter, Casey E, Hwang, Young, Fitzgerald, Ayannah S, Imai, Ize, Biernat, Wojciech, Rękawiecki, Bartłomiej, Majewska, Hanna, Dubaniewicz, Anna, Litzky, Leslie A, Feldman, Michael D, Bittinger, Kyle, Rossman, Milton D, Patterson, Karen C, Bushman, Frederic D, Collman, Ronald G

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The Gene Wiki in 2011: community intelligence applied to human gene annotation von Good, Benjamin M., Clarke, Erik L., de Alfaro, Luca, Su, Andrew I.

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T cell dynamics and response of the microbiota after gene therapy to treat X-linked severe combined immunodeficiency von Clarke, Erik L, Connell, A Jesse, Six, Emmanuelle, Kadry, Nadia A, Abbas, Arwa A, Hwang, Young, Everett, John K, Hofstaedter, Casey E, Marsh, Rebecca, Armant, Myriam, Kelsen, Judith, Notarangelo, Luigi D, Collman, Ronald G, Hacein-Bey-Abina, Salima, Kohn, Donald B, Cavazzana, Marina, Fischer, Alain, Williams, David A, Pai, Sung-Yun, Bushman, Frederic D

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Evaluation of a therapy for Idiopathic Chronic Enterocolitis in rhesus macaques ( Macaca mulatta ) and linked microbial community correlates von Taylor, Joshua M, Clarke, Erik L, Baker, Kate, Lauder, Abigail, Kim, Dorothy, Bailey, Aubrey, Wu, Gary D, Collman, Ronald G, Doyle-Meyers, Lara, Russell-Lodrigue, Kasi, Blanchard, James, Bushman, Frederic D, Bohm, Rudolf

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A task-based approach for Gene Ontology evaluation von Clarke, Erik L, Loguercio, Salvatore, Good, Benjamin M, Su, Andrew I

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swga: a primer design toolkit for selective whole genome amplification von Clarke, Erik L, Sundararaman, Sesh A, Seifert, Stephanie N, Bushman, Frederic D, Hahn, Beatrice H, Brisson, Dustin

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Respiratory Microbiome Disruption and Risk for Ventilator-Associated Lower Respiratory Tract Infection von Harrigan, James J, Abdallah, Hatem O, Clarke, Erik L, Oganisian, Arman, Roy, Jason A, Lautenbach, Ebbing, Reesey, Emily, Wernovsky, Magda, Tolomeo, Pam, Morawski, Zygmunt, Jacob, Jerry, Grippi, Michael A, Kelly, Brendan J

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Bidirectional transfer of Anelloviridae lineages between graft and host during lung transplantation von Abbas, Arwa A., Young, Jacque C., Clarke, Erik L., Diamond, Joshua M., Imai, Ize, Haas, Andrew R., Cantu, Edward, Lederer, David J., Meyer, Keith, Milewski, Rita K., Olthoff, Kim M., Shaked, Abraham, Christie, Jason D., Bushman, Frederic D., Collman, Ronald G.

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Molecular analysis of bacterial contamination on stethoscopes in an intensive care unit von Knecht, Vincent R, McGinniss, John E, Shankar, Hari M, Clarke, Erik L, Kelly, Brendan J, Imai, Ize, Fitzgerald, Ayannah S, Bittinger, Kyle, Bushman, Frederic D, Collman, Ronald G

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Upper Respiratory Dysbiosis with a Facultative-dominated Ecotype in Advanced Lung Disease and Dynamic Change after Lung Transplant von Simon-Soro, Aurea, Sohn, Michael B, McGinniss, John E, Imai, Ize, Brown, Melanie C, Knecht, Vincent R, Bailey, Aubrey, Clarke, Erik L, Cantu, Edward, Li, Hongzhe, Bittinger, Kyle, Diamond, Joshua M, Christie, Jason D, Bushman, Frederic D, Collman, Ronald G

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Linking genes to diseases with a SNPedia-Gene Wiki mashup von Good, Benjamin M, Clarke, Erik L, Loguercio, Salvatore, Su, Andrew I

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Building a biomedical semantic network in Wikipedia with Semantic Wiki Links von Good, Benjamin M, Clarke, Erik L, Loguercio, Salvatore, Su, Andrew I

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Sarcoidosis Microbiome Post-Processed Sequence Data von Clarke, Erik L.

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Example data for "Sunbeam: an extensible pipeline for analyzing metagenomic sequencing experiments" [Version 2] von Clarke, Erik L, Taylor, Louis J, Zhao, Chunyu, Connell, Andrew, Lee, Jung-Jin, Fett, Bryton, Bushman, Frederic D, Bittinger, Kyle

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Nanowire Solar Cells von Garnett, Erik C, Brongersma, Mark L, Cui, Yi, McGehee, Michael D

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Therapeutically activating RB: reestablishing cell cycle control in endocrine therapy-resistant breast cancer von Thangavel, Chellappagounder, Dean, Jeffry L, Ertel, Adam, Knudsen, Karen E, Aldaz, C Marcelo, Witkiewicz, Agnieszka K, Clarke, Robert, Knudsen, Erik S

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A cross‐scale analysis to understand and quantify the effects of photosynthetic enhancement on crop growth and yield across environments von Wu, Alex, Brider, Jason, Busch, Florian A., Chen, Min, Chenu, Karine, Clarke, Victoria C., Collins, Brian, Ermakova, Maria, Evans, John R., Farquhar, Graham D., Forster, Britta, Furbank, Robert T., Groszmann, Michael, Hernandez‐Prieto, Miguel A., Long, Benedict M., Mclean, Greg, Potgieter, Andries, Price, G. Dean, Sharwood, Robert E., Stower, Michael, Oosterom, Erik, Caemmerer, Susanne, Whitney, Spencer M., Hammer, Graeme L.

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Modeling the effect of climate change on U.S. state-level buildings energy demands in an integrated assessment framework von Zhou, Yuyu, Clarke, Leon, Eom, Jiyong, Kyle, Page, Patel, Pralit, Kim, Son H., Dirks, James, Jensen, Erik, Liu, Ying, Rice, Jennie, Schmidt, Laurel, Seiple, Timothy

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