Connecting omics signatures and revealing biological mechanisms with iLINCS von Pilarczyk, Marcin, Fazel-Najafabadi, Mehdi, Kouril, Michal, Shamsaei, Behrouz, Vasiliauskas, Juozas, Niu, Wen, Mahi, Naim, Zhang, Lixia, Clark, Nicholas A., Ren, Yan, White, Shana, Karim, Rashid, Xu, Huan, Biesiada, Jacek, Bennett, Mark F., Davidson, Sarah E., Reichard, John F., Roberts, Kurt, Stathias, Vasileios, Koleti, Amar, Vidovic, Dusica, Clarke, Daniel J. B., Schürer, Stephan C., Ma’ayan, Avi, Meller, Jarek, Medvedovic, Mario

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Transforming L1000 profiles to RNA-seq-like profiles with deep learning von Jeon, Minji, Xie, Zhuorui, Evangelista, John E, Wojciechowicz, Megan L, Clarke, Daniel J. B, Ma'ayan, Avi

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DrugShot: querying biomedical search terms to retrieve prioritized lists of small molecules von Kropiwnicki, Eryk, Lachmann, Alexander, Clarke, Daniel J B, Xie, Zhuorui, Jagodnik, Kathleen M, Ma'ayan, Avi

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Enrichr-KG: bridging enrichment analysis across multiple libraries von Evangelista, John Erol, Xie, Zhuorui, Marino, Giacomo B, Nguyen, Nhi, Clarke, Daniel J B, Ma’ayan, Avi

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PrismEXP: gene annotation prediction from stratified gene-gene co-expression matrices von Lachmann, Alexander, Rizzo, Kaeli A, Bartal, Alon, Jeon, Minji, Clarke, Daniel J B, Ma'ayan, Avi

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eXpression2Kinases (X2K) Web: linking expression signatures to upstream cell signaling networks von Clarke, Daniel J B, Kuleshov, Maxim V, Schilder, Brian M, Torre, Denis, Duffy, Mary E, Keenan, Alexandra B, Lachmann, Alexander, Feldmann, Axel S, Gundersen, Gregory W, Silverstein, Moshe C, Wang, Zichen, Ma'ayan, Avi

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LINCS Data Portal 2.0: next generation access point for perturbation-response signatures von Stathias, Vasileios, Turner, John, Koleti, Amar, Vidovic, Dusica, Cooper, Daniel, Fazel-Najafabadi, Mehdi, Pilarczyk, Marcin, Terryn, Raymond, Chung, Caty, Umeano, Afoma, Clarke, Daniel J B, Lachmann, Alexander, Evangelista, John Erol, Ma’ayan, Avi, Medvedovic, Mario, Schürer, Stephan C

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Rummagene: massive mining of gene sets from supporting materials of biomedical research publications von Clarke, Daniel J. B., Marino, Giacomo B., Deng, Eden Z., Xie, Zhuorui, Evangelista, John Erol, Ma’ayan, Avi

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GeneRanger and TargetRanger: processed gene and protein expression levels across cells and tissues for target discovery von Marino, Giacomo B, Ngai, Michael, Clarke, Daniel J B, Fleishman, Reid H, Deng, Eden Z, Xie, Zhuorui, Ahmed, Nasheath, Ma’ayan, Avi

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Toxicology knowledge graph for structural birth defects von Evangelista, John Erol, Clarke, Daniel J. B., Xie, Zhuorui, Marino, Giacomo B., Utti, Vivian, Jenkins, Sherry L., Ahooyi, Taha Mohseni, Bologa, Cristian G., Yang, Jeremy J., Binder, Jessica L., Kumar, Praveen, Lambert, Christophe G., Grethe, Jeffrey S., Wenger, Eric, Taylor, Deanne, Oprea, Tudor I., de Bono, Bernard, Ma’ayan, Avi

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eXpression2Kinases (X2K) Web: linking expression signatures to upstream cell signaling networks von Clarke, Daniel J B, Kuleshov, Maxim V, Schilder, Brian M, Torre, Denis, Duffy, Mary E, Keenan, Alexandra B, Lachmann, Alexander, Feldmann, Axel S, Gundersen, Gregory W, Silverstein, Moshe C, Wang, Zichen, Ma’ayan, Avi

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Predicting Lyme Disease From Patients' Peripheral Blood Mononuclear Cells Profiled With RNA-Sequencing von Clarke, Daniel J. B., Rebman, Alison W., Bailey, Allison, Wojciechowicz, Megan L., Jenkins, Sherry L., Evangelista, John E., Danieletto, Matteo, Fan, Jinshui, Eshoo, Mark W., Mosel, Michael R., Robinson, William, Ramadoss, Nitya, Bobe, Jason, Soloski, Mark J., Aucott, John N., Ma'ayan, Avi

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Gene Set Knowledge Discovery with Enrichr von Xie, Zhuorui, Bailey, Allison, Kuleshov, Maxim V., Clarke, Daniel J. B., Evangelista, John E., Jenkins, Sherry L., Lachmann, Alexander, Wojciechowicz, Megan L., Kropiwnicki, Eryk, Jagodnik, Kathleen M., Jeon, Minji, Ma'ayan, Avi

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Harmonizome 3.0: integrated knowledge about genes and proteins from diverse multi-omics resources von Diamant, Ido, Clarke, Daniel J B, Evangelista, John Erol, Lingam, Nathania, Ma’ayan, Avi

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Interoperable RNA-Seq analysis in the cloud von Lachmann, Alexander, Clarke, Daniel J.B., Torre, Denis, Xie, Zhuorui, Ma'ayan, Avi

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SigCom LINCS: data and metadata search engine for a million gene expression signatures von Evangelista, John Erol, Clarke, Daniel J B, Xie, Zhuorui, Lachmann, Alexander, Jeon, Minji, Chen, Kerwin, Jagodnik, Kathleen M, Jenkins, Sherry L, Kuleshov, Maxim V, Wojciechowicz, Megan L, Schürer, Stephan C, Medvedovic, Mario, Ma’ayan, Avi

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Computational screen to identify potential targets for immunotherapeutic identification and removal of senescence cells von Deng, Eden Z., Fleishman, Reid H., Xie, Zhuorui, Marino, Giacomo B., Clarke, Daniel J. B., Ma'ayan, Avi

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Appyters: Turning Jupyter Notebooks into data-driven web apps von Clarke, Daniel J.B., Jeon, Minji, Stein, Daniel J., Moiseyev, Nicole, Kropiwnicki, Eryk, Dai, Charles, Xie, Zhuorui, Wojciechowicz, Megan L., Litz, Skylar, Hom, Jason, Evangelista, John Erol, Goldman, Lucas, Zhang, Serena, Yoon, Christine, Ahamed, Tahmid, Bhuiyan, Samantha, Cheng, Minxuan, Karam, Julie, Jagodnik, Kathleen M., Shu, Ingrid, Lachmann, Alexander, Ayling, Sam, Jenkins, Sherry L., Ma'ayan, Avi

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EnrichrBot: Twitter bot tracking tweets about human genes von Bartal, Alon, Lachmann, Alexander, Clarke, Daniel J B, Seiden, Allison H, Jagodnik, Kathleen M, Ma’ayan, Avi

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lncHUB2: aggregated and inferred knowledge about human and mouse lncRNAs von Marino, Giacomo B, Wojciechowicz, Megan L, Clarke, Daniel J B, Kuleshov, Maxim V, Xie, Zhuorui, Jeon, Minji, Lachmann, Alexander, Ma’ayan, Avi

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