Genome-Wide Profiles of Extra-cranial Malignant Rhabdoid Tumors Reveal Heterogeneity and Dysregulated Developmental Pathways von Chun, Hye-Jung E., Lim, Emilia L., Heravi-Moussavi, Alireza, Saberi, Saeed, Mungall, Karen L., Bilenky, Mikhail, Carles, Annaick, Tse, Kane, Shlafman, Inna, Zhu, Kelsey, Qian, Jenny Q., Palmquist, Diana L., He, An, Long, William, Goya, Rodrigo, Ng, Michelle, LeBlanc, Veronique G., Pleasance, Erin, Thiessen, Nina, Wong, Tina, Chuah, Eric, Zhao, Yong-Jun, Schein, Jacquie E., Gerhard, Daniela S., Taylor, Michael D., Mungall, Andrew J., Moore, Richard A., Ma, Yussanne, Jones, Steven J.M., Perlman, Elizabeth J., Hirst, Martin, Marra, Marco A.

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Genomic convergence toward diploidy in Saccharomyces cerevisiae von Gerstein, Aleeza C, Chun, Hye-Jung E, Grant, Alex, Otto, Sarah P

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The presence of tumour‐infiltrating neutrophils is an independent adverse prognostic feature in clear cell renal cell carcinoma von Tessier‐Cloutier, Basile, Twa, David DW, Marzban, Mahsa, Kalina, Jennifer, Chun, Hye‐Jung E, Pavey, Nils, Tanweer, Zaidi, Katz, Ruth L, Lum, Julian J, Salina, Davide

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Comprehensive whole genome sequence analyses yields novel genetic and structural insights for Intellectual Disability von Zahir, Farah R, Mwenifumbo, Jill C, Chun, Hye-Jung E, Lim, Emilia L, Van Karnebeek, Clara D M, Couse, Madeline, Mungall, Karen L, Lee, Leora, Makela, Nancy, Armstrong, Linlea, Boerkoel, Cornelius F, Langlois, Sylvie L, McGillivray, Barbara M, Jones, Steven J M, Friedman, Jan M, Marra, Marco A

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Clinical response to nivolumab in an INI1-deficient pediatric chordoma correlates with immunogenic recognition of brachyury von Williamson, Laura M., Rive, Craig M., Di Francesco, Daniela, Titmuss, Emma, Chun, Hye-Jung E., Brown, Scott D., Milne, Katy, Pleasance, Erin, Lee, Anna F., Yip, Stephen, Rosenbaum, Daniel G., Hasselblatt, Martin, Johann, Pascal D., Kool, Marcel, Harvey, Melissa, Dix, David, Renouf, Daniel J., Holt, Robert A., Nelson, Brad H., Hirst, Martin, Jones, Steven J. M., Laskin, Janessa, Rassekh, Shahrad R., Deyell, Rebecca J., Marra, Marco A.

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Identification and Analyses of Extra-Cranial and Cranial Rhabdoid Tumor Molecular Subgroups Reveal Tumors with Cytotoxic T Cell Infiltration von Chun, Hye-Jung E., Johann, Pascal D., Milne, Katy, Zapatka, Marc, Buellesbach, Annette, Ishaque, Naveed, Iskar, Murat, Erkek, Serap, Wei, Lisa, Tessier-Cloutier, Basile, Lever, Jake, Titmuss, Emma, Topham, James T., Bowlby, Reanne, Chuah, Eric, Mungall, Karen L., Ma, Yussanne, Mungall, Andrew J., Moore, Richard A., Taylor, Michael D., Gerhard, Daniela S., Jones, Steven J.M., Korshunov, Andrey, Gessler, Manfred, Kerl, Kornelius, Hasselblatt, Martin, Frühwald, Michael C., Perlman, Elizabeth J., Nelson, Brad H., Pfister, Stefan M., Marra, Marco A., Kool, Marcel

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Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding von Ralph, Steven G, Chun, Hye Jung E, Cooper, Dawn, Kirkpatrick, Robert, Kolosova, Natalia, Gunter, Lee, Tuskan, Gerald A, Douglas, Carl J, Holt, Robert A, Jones, Steven J M, Marra, Marco A, Bohlmann, Jörg

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Comprehensive molecular characterization of gastric adenocarcinoma von Bass, Adam J

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A conifer genomics resource of 200,000 spruce (Picea spp.) ESTs and 6,464 high-quality, sequence-finished full-length cDNAs for Sitka spruce (Picea sitchensis) von Ralph, Steven G, Chun, Hye Jung E, Kolosova, Natalia, Cooper, Dawn, Oddy, Claire, Ritland, Carol E, Kirkpatrick, Robert, Moore, Richard, Barber, Sarah, Holt, Robert A, Jones, Steven J M, Marra, Marco A, Douglas, Carl J, Ritland, Kermit, Bohlmann, Jörg

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Multiplatform Analysis of 12 Cancer Types Reveals Molecular Classification within and across Tissues of Origin von Hoadley, Katherine A., Yau, Christina, Wolf, Denise M., Cherniack, Andrew D., Tamborero, David, Ng, Sam, Leiserson, Max D.M., Niu, Beifang, McLellan, Michael D., Uzunangelov, Vladislav, Zhang, Jiashan, Kandoth, Cyriac, Akbani, Rehan, Shen, Hui, Omberg, Larsson, Chu, Andy, Margolin, Adam A., van’t Veer, Laura J., Lopez-Bigas, Nuria, Laird, Peter W., Raphael, Benjamin J., Ding, Li, Robertson, A. Gordon, Byers, Lauren A., Mills, Gordon B., Weinstein, John N., Van Waes, Carter, Chen, Zhong, Collisson, Eric A., Benz, Christopher C., Perou, Charles M., Stuart, Joshua M.

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Comprehensivemolecular characterization of clear cell renal cell carcinoma

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Integrated genomic characterization of endometrial carcinoma von Levine, Douglas A.

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Comprehensive molecular portraits of human breast tumours von Prat Aparicio, Aleix

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Comprehensive molecular characterization of human colon and rectal cancer von Muzny, Donna M, Bainbridge, Matthew N, Chang, Kyle, Dinh, Huyen H, Drummond, Jennifer A, Fowler, Gerald, Kovar, Christie L

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Identification of pre-leukaemic haematopoietic stem cells in acute leukaemia von Shlush, Liran I., Zandi, Sasan, Mitchell, Amanda, Chen, Weihsu Claire, Brandwein, Joseph M., Gupta, Vikas, Kennedy, James A., Schimmer, Aaron D., Schuh, Andre C., Yee, Karen W., McLeod, Jessica L., Doedens, Monica, Medeiros, Jessie J. F., Marke, Rene, Kim, Hyeoung Joon, Lee, Kwon, McPherson, John D., Hudson, Thomas J., Pan-Leukemia Gene Panel Consortium, The HALT, Brown, Andrew M. K., Yousif, Fouad, Trinh, Quang M., Stein, Lincoln D., Minden, Mark D., Wang, Jean C. Y., Dick, John E.

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The Cancer Genome Atlas Pan-Cancer analysis project von Weinstein, John N, Collisson, Eric A, Mills, Gordon B, Shaw, Kenna R Mills, Ozenberger, Brad A, Ellrott, Kyle, Shmulevich, Ilya, Sander, Chris, Stuart, Joshua M

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Comprehensive genomic characterization of squamous cell lung cancers

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Comprehensive molecular characterization of clear cell renal cell carcinoma

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Abstract 3087: Whole genome sequencing of rhabdoid tumors of the kidney von Chun, Hye-Jung E., Zhu, Kelsey, Qian, Jenny Q., Mungall, Karen L., Ma, Yussanne, Zhao, Yong-Jun, Mungall, Andrew J., Moore, Richard A., Schein, Jacquie E., Gerhard, Daniela S., Perlman, Elizabeth J., Marra, Marco A.

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A conifer genomics resource of 200,000 spruce von Ralph, Steven G, Chun, Hye Jung E, Kolosova, Natalia, Cooper, Dawn, Oddy, Claire, Ritland, Carol E, Kirkpatrick, Robert, Moore, Richard, Barber, Sarah, Holt, Robert A, Jones, Steven JM, Marra, Marco A, Douglas, Carl J, Ritland, Kermit, Bohlmann, Jorg

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